| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0055498.1 gag-pol fusion protein [Cucumis melo var. makuwa] | 7.2e-41 | 50.74 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA+WK+ +N VL+IDDLRFVL+EECP P NA++T+R+ Y+RW KAN+KAR YIL
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: -------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKG
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KGQK GE NVA S ++F + S+SGTK PSSSG KK +KK G
Subjt: -------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKG
Query: GKG
G+G
Subjt: GKG
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| KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa] | 2.6e-38 | 44.44 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA WK+ +N VL+IDDLRFVL+EECP P NA+QTVR+ Y+RW KAN+KAR YILA
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: -----------------------------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKG
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KG
Subjt: -----------------------------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKG
Query: QKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKGGKG
QK GEANVA S ++F + S+SGTK PSSSG KK +KKKGG+G
Subjt: QKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKGGKG
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| KAA0062798.1 gag/pol protein [Cucumis melo var. makuwa] | 8.8e-39 | 48.17 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA+WK+ +N VL+IDDLRF L+EECP P NA++TVR+AY+RW KAN+KAR YILA
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KGQK GEANVA S ++F + S SGTK
Subjt: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
Query: APSSSGTKKIQKKKGGKG
P SS KK +KKKGG+G
Subjt: APSSSGTKKIQKKKGGKG
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| TYJ96755.1 gag/pol protein [Cucumis melo var. makuwa] | 8.8e-39 | 48.17 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA+WK+ +N VL+IDDLRF L+EECP P NA++TVR+AY+RW KAN+KAR YILA
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KGQK GEANVA S ++F + S SGTK
Subjt: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
Query: APSSSGTKKIQKKKGGKG
P SS KK +KKKGG+G
Subjt: APSSSGTKKIQKKKGGKG
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| TYK21330.1 gag/pol protein [Cucumis melo var. makuwa] | 4.1e-44 | 52.25 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
MSSSIIALLK ++LTG NY TWKS LNM+LVI +LRFVL+EECPP P +NASQ+V+DAYDRWTK NDKAR+YIL+
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: -------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHSKRFQKDSSSGT
KSL KSFLQFR N MNKIEY MTT L +LQ FQSL KGQKEG+ANV HS+RF
Subjt: -------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHSKRFQKDSSSGT
Query: KYAPSSSGTKKIQKKKGGKGKG
APSSSG+KKIQKKKGGKGKG
Subjt: KYAPSSSGTKKIQKKKGGKGKG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7UKD1 Gag-pol fusion protein | 3.5e-41 | 50.74 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA+WK+ +N VL+IDDLRFVL+EECP P NA++T+R+ Y+RW KAN+KAR YIL
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: -------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKG
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KGQK GE NVA S ++F + S+SGTK PSSSG KK +KK G
Subjt: -------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKG
Query: GKG
G+G
Subjt: GKG
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| A0A5A7V5A8 Gag/pol protein | 4.3e-39 | 48.17 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA+WK+ +N VL+IDDLRF L+EECP P NA++TVR+AY+RW KAN+KAR YILA
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KGQK GEANVA S ++F + S SGTK
Subjt: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
Query: APSSSGTKKIQKKKGGKG
P SS KK +KKKGG+G
Subjt: APSSSGTKKIQKKKGGKG
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| A0A5A7V6N0 Gag/pol protein | 1.2e-38 | 44.44 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA WK+ +N VL+IDDLRFVL+EECP P NA+QTVR+ Y+RW KAN+KAR YILA
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: -----------------------------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKG
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KG
Subjt: -----------------------------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKG
Query: QKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKGGKG
QK GEANVA S ++F + S+SGTK PSSSG KK +KKKGG+G
Subjt: QKEGEANVAHS-KRFQKDSSSGTKYAPSSSGTKKIQKKKGGKG
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| A0A5D3BE74 Gag/pol protein | 4.3e-39 | 48.17 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
M+S+ + +L +KL G+NYA+WK+ +N VL+IDDLRF L+EECP P NA++TVR+AY+RW KAN+KAR YILA
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
+SLP+SFLQFRSNAVMNKI YT+TTLLN+LQTF+SLMK KGQK GEANVA S ++F + S SGTK
Subjt: ----------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHS-KRFQKDSSSGTKY
Query: APSSSGTKKIQKKKGGKG
P SS KK +KKKGG+G
Subjt: APSSSGTKKIQKKKGGKG
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| A0A5D3DCZ2 Gag/pol protein | 2.0e-44 | 52.25 | Show/hide |
Query: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
MSSSIIALLK ++LTG NY TWKS LNM+LVI +LRFVL+EECPP P +NASQ+V+DAYDRWTK NDKAR+YIL+
Subjt: MSSSIIALLKNEKLTGDNYATWKSNLNMVLVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANDKARVYILA-------------------------
Query: -------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHSKRFQKDSSSGT
KSL KSFLQFR N MNKIEY MTT L +LQ FQSL KGQKEG+ANV HS+RF
Subjt: -------------------------------------KSLPKSFLQFRSNAVMNKIEYTMTTLLNKLQTFQSLMKNKGQKEGEANVAHSKRFQKDSSSGT
Query: KYAPSSSGTKKIQKKKGGKGKG
APSSSG+KKIQKKKGGKGKG
Subjt: KYAPSSSGTKKIQKKKGGKGKG
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