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PI0023587 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023587
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:23462566..23463298
RNA-Seq ExpressionPI0023587
SyntenyPI0023587
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040490.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3557.43Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSH
        M+TS+RAP+H WTKEE+  LVECL+ELV  GGW               SHPAAKGLLNK FP+YD+  YVFGRDR TG  A+TF DVGSN P G++ F  
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSH

Query:  YDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
         DGN+ E P +YSQ +D+S  D+   R  R SE R GSSGSKRKRG Q
Subjt:  YDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-3648.11Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL
        M +SSR PKH WTKEE+A LVECLVELV++GGW                                                SHPAAKGLLNK F HYD+L
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL

Query:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
         YVFG+DR TGGRAE+F D+GSN P G++ F+  D +D +   MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G A ++
Subjt:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

KAA0054147.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-3648.65Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL
        M +SSR PKH WTKEE+A LVECLVELV+ GGW                                                SHPAAKGLLNK F HYD+L
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL

Query:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
         YVFG+DR TGGRAE+F D+GSN PPG++ F+     D++ P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G A ++
Subjt:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

KAA0062548.1 retrotransposon protein [Cucumis melo var. makuwa]9.6e-3654.66Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG
        M+TS+RAP+H WTK+E+  LVECL+ELVS GGW                           SHPAAKGLLNKPFP+YD+L YVFGRDR TG  AETF DVG
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG

Query:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
        SN P  G++ F   DGN+ + P MYSQG+D+S DD+   R  R  E R GSSGSKRKR  Q
Subjt:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

KAA0062786.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-3654.66Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG
        M+TS+RAP+H WTKEE+  LVECL+ELVS GGW                           SHPAAKGLLNKPFP+YD+L YVFGRDR TG   ETF DV 
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG

Query:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
        SN P  G++ F   DGN+ E P +YSQG+D+S DD+   +  R SE R GSSGSKRKRG Q
Subjt:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

TrEMBL top hitse value%identityAlignment
A0A5A7TB06 Retrotransposon protein7.9e-3657.43Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSH
        M+TS+RAP+H WTKEE+  LVECL+ELV  GGW               SHPAAKGLLNK FP+YD+  YVFGRDR TG  A+TF DVGSN P G++ F  
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSH

Query:  YDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
         DGN+ E P +YSQ +D+S  D+   R  R SE R GSSGSKRKRG Q
Subjt:  YDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

A0A5A7TYQ6 Retrotransposon protein2.7e-3648.11Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL
        M +SSR PKH WTKEE+A LVECLVELV++GGW                                                SHPAAKGLLNK F HYD+L
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL

Query:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
         YVFG+DR TGGRAE+F D+GSN P G++ F+  D +D +   MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G A ++
Subjt:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

A0A5A7UHV9 Retrotransposon protein1.2e-3648.65Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL
        M +SSR PKH WTKEE+A LVECLVELV+ GGW                                                SHPAAKGLLNK F HYD+L
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW------------------------------------------------SHPAAKGLLNKPFPHYDDL

Query:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA
         YVFG+DR TGGRAE+F D+GSN PPG++ F+     D++ P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G A ++
Subjt:  CYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEA

A0A5A7V4P8 Retrotransposon protein4.6e-3654.66Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG
        M+TS+RAP+H WTK+E+  LVECL+ELVS GGW                           SHPAAKGLLNKPFP+YD+L YVFGRDR TG  AETF DVG
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG

Query:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
        SN P  G++ F   DGN+ + P MYSQG+D+S DD+   R  R  E R GSSGSKRKR  Q
Subjt:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

A0A5D3BCA9 Retrotransposon protein2.7e-3654.66Show/hide
Query:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG
        M+TS+RAP+H WTKEE+  LVECL+ELVS GGW                           SHPAAKGLLNKPFP+YD+L YVFGRDR TG   ETF DV 
Subjt:  MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVG

Query:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ
        SN P  G++ F   DGN+ E P +YSQG+D+S DD+   +  R SE R GSSGSKRKRG Q
Subjt:  SNVP-PGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGTCTTCAAGGGCCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCATCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCTGGCGGGTGGAGTCATCCAGC
CGCAAAGGGCCTCTTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGACGATGTTGGGT
CAAACGTGCCTCCAGGCTTCGAAGGATTTTCCCACTACGACGGGAACGATATGGAGAACCCAACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACT
CCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACGTCTTCAAGGGCCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCATCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCTGGCGGGTGGAGTCATCCAGC
CGCAAAGGGCCTCTTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGACGATGTTGGGT
CAAACGTGCCTCCAGGCTTCGAAGGATTTTCCCACTACGACGGGAACGATATGGAGAACCCAACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACT
CCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCATAA
Protein sequenceShow/hide protein sequence
MATSSRAPKHHWTKEEDAILVECLVELVSSGGWSHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMT
PRSVRMSEARPGSSGSKRKRGGQALEAA