; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023631 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023631
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:25683177..25684164
RNA-Seq ExpressionPI0023631
SyntenyPI0023631
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-6044.55Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                                              SGF W DE KCI
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI

Query:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT
        +++KE+FD W  SHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R 
Subjt:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT

Query:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL
         SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  LQ QD      E+V  ++ IPEL+  D+ RLMRIL+ +V+DMKAFL+VP+ +K  YC++IL
Subjt:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL

Query:  EEN
        +EN
Subjt:  EEN

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-6044.55Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                                              SGF W DE KCI
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI

Query:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT
        +++KE+FD W  SHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R 
Subjt:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT

Query:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL
         SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  LQ QD      E+V  ++ IPEL+  D+ RLMRIL+ +V+DMKAFL+VP+ +K  YC++IL
Subjt:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL

Query:  EEN
        +EN
Subjt:  EEN

KAA0044843.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-6144.88Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                                              SGF W DE KCI
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI

Query:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT
        I++KE+FD W  SHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R 
Subjt:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT

Query:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL
         SS  KRK+ G A+ + +I++ AI++ N+QL  IAEW  LQ QD      E+V Q++ IPEL+  D+ RLMRI++ +V+DMKAFL+VP+ +K  YC++IL
Subjt:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL

Query:  EEN
        +EN
Subjt:  EEN

KAA0046363.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-6047.06Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEV---------------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL
        M SSSR PKH WTKEEE+ LVE LV LV+ GGW+S+NGTFRP   +    +               KCI+++K++FD W+KSHPA KGLLNK F +YD+L
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEV---------------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL

Query:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL
         YVFGKDRA     E+FAD+G N                        GL+MSP+D++ +R  R  E R  SSR KRK+ G A  + +I++ AI++ N+QL
Subjt:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL

Query:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN
          IAEW  LQ QD      E+V Q++ IPEL+  D+ RLMRIL+ +V+D+KAFL+VP+ +K  YC++IL+EN
Subjt:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-6048.16Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFD-------WKDEV--------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTF P   +       +K  V        KCII++KE+FD W+KSHPA KGLLNK F +YD+L
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFD-------WKDEV--------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL

Query:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL
         YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R  SS  KRK+ G A  + +I++ A+++ N+QL
Subjt:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL

Query:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN
          IAEW  LQ QD      E+V Q++ IPEL+  D+ RLMRI++ +V+DMKAFL+VP+ +K  YC++IL+EN
Subjt:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN

TrEMBL top hitse value%identityAlignment
A0A5A7TMW5 Retrotransposon protein3.2e-6144.88Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                                              SGF W DE KCI
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI

Query:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT
        I++KE+FD W  SHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R 
Subjt:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT

Query:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL
         SS  KRK+ G A+ + +I++ AI++ N+QL  IAEW  LQ QD      E+V Q++ IPEL+  D+ RLMRI++ +V+DMKAFL+VP+ +K  YC++IL
Subjt:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL

Query:  EEN
        +EN
Subjt:  EEN

A0A5A7TS39 Retrotransposon protein7.1e-6147.06Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEV---------------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL
        M SSSR PKH WTKEEE+ LVE LV LV+ GGW+S+NGTFRP   +    +               KCI+++K++FD W+KSHPA KGLLNK F +YD+L
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEV---------------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL

Query:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL
         YVFGKDRA     E+FAD+G N                        GL+MSP+D++ +R  R  E R  SSR KRK+ G A  + +I++ AI++ N+QL
Subjt:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL

Query:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN
          IAEW  LQ QD      E+V Q++ IPEL+  D+ RLMRIL+ +V+D+KAFL+VP+ +K  YC++IL+EN
Subjt:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN

A0A5A7TYQ6 Retrotransposon protein5.4e-6148.16Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFD-------WKDEV--------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTF P   +       +K  V        KCII++KE+FD W+KSHPA KGLLNK F +YD+L
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFD-------WKDEV--------KCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDL

Query:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL
         YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R  SS  KRK+ G A  + +I++ A+++ N+QL
Subjt:  CYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQL

Query:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN
          IAEW  LQ QD      E+V Q++ IPEL+  D+ RLMRI++ +V+DMKAFL+VP+ +K  YC++IL+EN
Subjt:  KAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVILEEN

A0A5A7UME4 Retrotransposon protein1.2e-6044.55Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                                              SGF W DE KCI
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI

Query:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT
        +++KE+FD W  SHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R 
Subjt:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT

Query:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL
         SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  LQ QD      E+V  ++ IPEL+  D+ RLMRIL+ +V+DMKAFL+VP+ +K  YC++IL
Subjt:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL

Query:  EEN
        +EN
Subjt:  EEN

A0A5D3DPR5 Retrotransposon protein1.2e-6044.55Show/hide
Query:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI
        M SSSR PKH WTKEEE+ LVE LV+LV+ GGW+SDNGTFRP                                              SGF W DE KCI
Subjt:  MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRP----------------------------------------------SGFDWKDEVKCI

Query:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT
        +++KE+FD W  SHPA KGLLNK F +YD+L YVFGKDRA    AE+FAD+G N                        GL+MSP+D++ +R  R  E R 
Subjt:  ISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLN------------------------GLDMSPNDIVGSRPRRSMEGRT

Query:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL
         SS  KRK+ G A  + +I++ AI++ N+QL  IAEW  LQ QD      E+V  ++ IPEL+  D+ RLMRIL+ +V+DMKAFL+VP+ +K  YC++IL
Subjt:  GSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNELKLEYCTVIL

Query:  EEN
        +EN
Subjt:  EEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein4.6e-0430Show/hide
Query:  RPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFG
        R  GF W +E + + +   ++  ++K+H   +  + +P PYY DLC + G
Subjt:  RPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFG

AT4G02210.2 unknown protein4.6e-0430Show/hide
Query:  RPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFG
        R  GF W +E + + +   ++  ++K+H   +  + +P PYY DLC + G
Subjt:  RPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAGTTCCTCTCGGGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGGCCTTGGTGAAGTTGGTATCTGTCGGCGGCTGGAAGTCAGACAA
CGGTACCTTCCGTCCTAGTGGGTTTGATTGGAAGGATGAAGTGAAGTGCATCATCTCTAAGAAAGAGTTGTTTGATTATTGGATGAAGAGTCATCCTGCTGTGAAAGGCC
TCCTAAACAAGCCATTTCCCTATTACGACGACCTGTGCTACGTATTTGGGAAGGATCGTGCGATGGAAGCTCATGCGGAGACATTTGCCGATGTCGGGTTGAATGGACTA
GACATGTCGCCTAATGACATCGTAGGCTCACGACCCCGTCGCTCGATGGAGGGTAGGACTGGTTCAAGTAGACCGAAGAGGAAGCAAGGAGGCCAGGCAGTACAGACTGT
GGAGATCATTCAGAATGCAATAGACTTCACCAACGACCAGTTGAAGGCCATTGCAGAGTGGCTGAATTTACAACATCAAGATGAATGCGTCGCTTGTGACGAAGTCGTTA
ACCAGATACAGGGCATCCCTGAACTAAGTACCCGCGACAAGTTGCGCCTTATGCGAATACTGCTATGTAGTGTGAACGACATGAAAGCATTCTTGAAGGTACCCAATGAG
CTTAAGCTGGAATACTGCACGGTCATTCTCGAAGAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAGTTCCTCTCGGGCCCCCAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGGCCTTGGTGAAGTTGGTATCTGTCGGCGGCTGGAAGTCAGACAA
CGGTACCTTCCGTCCTAGTGGGTTTGATTGGAAGGATGAAGTGAAGTGCATCATCTCTAAGAAAGAGTTGTTTGATTATTGGATGAAGAGTCATCCTGCTGTGAAAGGCC
TCCTAAACAAGCCATTTCCCTATTACGACGACCTGTGCTACGTATTTGGGAAGGATCGTGCGATGGAAGCTCATGCGGAGACATTTGCCGATGTCGGGTTGAATGGACTA
GACATGTCGCCTAATGACATCGTAGGCTCACGACCCCGTCGCTCGATGGAGGGTAGGACTGGTTCAAGTAGACCGAAGAGGAAGCAAGGAGGCCAGGCAGTACAGACTGT
GGAGATCATTCAGAATGCAATAGACTTCACCAACGACCAGTTGAAGGCCATTGCAGAGTGGCTGAATTTACAACATCAAGATGAATGCGTCGCTTGTGACGAAGTCGTTA
ACCAGATACAGGGCATCCCTGAACTAAGTACCCGCGACAAGTTGCGCCTTATGCGAATACTGCTATGTAGTGTGAACGACATGAAAGCATTCTTGAAGGTACCCAATGAG
CTTAAGCTGGAATACTGCACGGTCATTCTCGAAGAGAACGTTTGA
Protein sequenceShow/hide protein sequence
MPSSSRAPKHIWTKEEESYLVEALVKLVSVGGWKSDNGTFRPSGFDWKDEVKCIISKKELFDYWMKSHPAVKGLLNKPFPYYDDLCYVFGKDRAMEAHAETFADVGLNGL
DMSPNDIVGSRPRRSMEGRTGSSRPKRKQGGQAVQTVEIIQNAIDFTNDQLKAIAEWLNLQHQDECVACDEVVNQIQGIPELSTRDKLRLMRILLCSVNDMKAFLKVPNE
LKLEYCTVILEENV