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PI0023736 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023736
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr03:17064684..17065653
RNA-Seq ExpressionPI0023736
SyntenyPI0023736
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]6.9e-3951.18Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF
        RSNN RLR+VA+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S  M        Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVA---------------IPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL Y+ P A               +PEQ DEQQQ E QE +++QRVQSR+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVA---------------IPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ-----RQPG
        RQ     R+PG
Subjt:  RQ-----RQPG

TYK18891.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]6.9e-3951.18Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF
        RSNN RLR+VA+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S  M        Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVAIPE---------------QQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL Y+ P A+PE               Q DEQQQ E QE +++QRVQSR+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVAIPE---------------QQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ-----RQPG
        RQ     R+PG
Subjt:  RQ-----RQPG

TYK27427.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]9.0e-3950.99Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF
        RSNN+RLR++A+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S         M Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL YK P                A+PEQ DEQQQ E  E +++QRVQ R+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ
        RQ
Subjt:  RQ

XP_008449513.1 PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo]9.0e-3950.99Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF
        RSNN+RLR++A+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S         M Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL YK P                A+PEQ DEQQQ E  E +++QRVQ R+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ
        RQ
Subjt:  RQ

XP_016900498.1 PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo]9.0e-3950.99Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF
        RSNN+RLR++A+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S         M Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL YK P                A+PEQ DEQQQ E  E +++QRVQ R+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ
        RQ
Subjt:  RQ

TrEMBL top hitse value%identityAlignment
A0A1S3BLK4 mediator of RNA polymerase II transcription subunit 12-like isoform X14.4e-3950.99Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF
        RSNN+RLR++A+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S         M Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL YK P                A+PEQ DEQQQ E  E +++QRVQ R+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ
        RQ
Subjt:  RQ

A0A1S4DWZ9 GATA zinc finger domain-containing protein 10-like isoform X24.4e-3950.99Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF
        RSNN+RLR++A+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S         M Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL YK P                A+PEQ DEQQQ E  E +++QRVQ R+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ
        RQ
Subjt:  RQ

A0A5A7U5S8 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.3e-3951.18Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF
        RSNN RLR+VA+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S  M        Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVA---------------IPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL Y+ P A               +PEQ DEQQQ E QE +++QRVQSR+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVA---------------IPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ-----RQPG
        RQ     R+PG
Subjt:  RQ-----RQPG

A0A5D3D5R5 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.3e-3951.18Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF
        RSNN RLR+VA+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S  M        Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEASIWM-------RYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVAIPE---------------QQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL Y+ P A+PE               Q DEQQQ E QE +++QRVQSR+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVAIPE---------------QQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ-----RQPG
        RQ     R+PG
Subjt:  RQ-----RQPG

A0A5D3DUI1 Mediator of RNA polymerase II transcription subunit 12-like isoform X14.4e-3950.99Show/hide
Query:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF
        RSNN+RLR++A+ PQQV++ICNDNE+Y+ENI YM DVPIVP PVQRR                            QS  +  S         M Y DSG 
Subjt:  RSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRR--------------------------HAQSNDDEAS-------IWMRYLDSGF

Query:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ
        GQ SDF   YY+SE G SS++FGQ YYDLG DPSSSYMH HGRG GEHNEYL YK P                A+PEQ DEQQQ E  E +++QRVQ R+
Subjt:  GQLSDFRTRYYSSETGLSSSNFGQGYYDLGIDPSSSYMHSHGRGNGEHNEYLNYKAP---------------VAIPEQQDEQQQLEIQERLEEQRVQSRQ

Query:  RQ
        RQ
Subjt:  RQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCACGACATATGACAGACGGTTAGTCCTATCATATGTTTTCACATCGAGATCGAACAATAGTAGACTTCGTGATGTTGCTAATTACCCACAACAGGTCATAGATAT
ATGCAACGACAACGAGCGGTACATAGAGAACATACTGTATATGTGTGATGTACCCATTGTACCTGTACCAGTTCAAAGGAGACATGCTCAATCCAATGATGATGAAGCCA
GCATTTGGATGAGATATTTAGATTCAGGATTTGGTCAATTATCAGACTTCAGAACAAGATATTATAGTTCAGAGACAGGTCTATCATCATCAAACTTTGGTCAAGGATAT
TATGATTTAGGGATCGATCCATCATCTTCATATATGCATAGCCACGGGCGAGGTAATGGAGAACATAACGAATATTTGAACTATAAAGCACCTGTAGCCATACCCGAGCA
ACAAGATGAGCAACAACAACTAGAGATTCAAGAGAGACTAGAGGAACAAAGAGTTCAGAGTCGACAACGACAACGACAACCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCACGACATATGACAGACGGTTAGTCCTATCATATGTTTTCACATCGAGATCGAACAATAGTAGACTTCGTGATGTTGCTAATTACCCACAACAGGTCATAGATAT
ATGCAACGACAACGAGCGGTACATAGAGAACATACTGTATATGTGTGATGTACCCATTGTACCTGTACCAGTTCAAAGGAGACATGCTCAATCCAATGATGATGAAGCCA
GCATTTGGATGAGATATTTAGATTCAGGATTTGGTCAATTATCAGACTTCAGAACAAGATATTATAGTTCAGAGACAGGTCTATCATCATCAAACTTTGGTCAAGGATAT
TATGATTTAGGGATCGATCCATCATCTTCATATATGCATAGCCACGGGCGAGGTAATGGAGAACATAACGAATATTTGAACTATAAAGCACCTGTAGCCATACCCGAGCA
ACAAGATGAGCAACAACAACTAGAGATTCAAGAGAGACTAGAGGAACAAAGAGTTCAGAGTCGACAACGACAACGACAACCAGGTTGA
Protein sequenceShow/hide protein sequence
MVTTYDRRLVLSYVFTSRSNNSRLRDVANYPQQVIDICNDNERYIENILYMCDVPIVPVPVQRRHAQSNDDEASIWMRYLDSGFGQLSDFRTRYYSSETGLSSSNFGQGY
YDLGIDPSSSYMHSHGRGNGEHNEYLNYKAPVAIPEQQDEQQQLEIQERLEEQRVQSRQRQRQPG