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PI0023770 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023770
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr03:20626988..20627449
RNA-Seq ExpressionPI0023770
SyntenyPI0023770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025798.1 uncharacterized protein E6C27_scaffold34G00480 [Cucumis melo var. makuwa]6.5e-0938.89Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N+ IL   +A  P Q  L LSY+L +GSHVPD+ H++RP   + +   +D+ +   G  +P  + ++I++ LT+ESR+LST +  L  RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQ
        D +V  L+
Subjt:  DFIVTTLQ

KAA0040543.1 uncharacterized protein E6C27_scaffold262G00970 [Cucumis melo var. makuwa]1.0e-1753.1Show/hide
Query:  EAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPENE
        EA S S   L LSY L QGSHVP+I H +RP    D P  ++L   DGGLLIPL++ N I HVLT ES SLS I+QEL V R+ I+++V T  LILP   
Subjt:  EAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPENE

Query:  GASTSNGVEPSIS
          STS    PS S
Subjt:  GASTSNGVEPSIS

KAA0053603.1 uncharacterized protein E6C27_scaffold190G001780 [Cucumis melo var. makuwa]1.7e-0937.72Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+     G  +   + ++I+++ T ES++LST +  L  RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQLILPEN
        D +V  L+ ++P +
Subjt:  DFIVTTLQLILPEN

KAA0062797.1 uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa]1.3e-0936.84Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N  IL +++ P P+   L LSY+L QGSHVPDI H++RP     +   DD+     G  +   + ++I++ LT+ESR+LST +     RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQLILPEN
        D ++  L+ ++P +
Subjt:  DFIVTTLQLILPEN

TYK19190.1 uncharacterized protein E5676_scaffold522G001260 [Cucumis melo var. makuwa]2.9e-0937.72Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+     G  +   + ++I+++L  ES++LST +  L  RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQLILPEN
        D +V  L+ ++P +
Subjt:  DFIVTTLQLILPEN

TrEMBL top hitse value%identityAlignment
A0A5A7TBV1 Uncharacterized protein4.8e-1853.1Show/hide
Query:  EAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPENE
        EA S S   L LSY L QGSHVP+I H +RP    D P  ++L   DGGLLIPL++ N I HVLT ES SLS I+QEL V R+ I+++V T  LILP   
Subjt:  EAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPENE

Query:  GASTSNGVEPSIS
          STS    PS S
Subjt:  GASTSNGVEPSIS

A0A5A7UCJ0 Uncharacterized protein8.3e-1037.72Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+     G  +   + ++I+++ T ES++LST +  L  RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQLILPEN
        D +V  L+ ++P +
Subjt:  DFIVTTLQLILPEN

A0A5A7V746 Uncharacterized protein6.3e-1036.84Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N  IL +++ P P+   L LSY+L QGSHVPDI H++RP     +   DD+     G  +   + ++I++ LT+ESR+LST +     RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQLILPEN
        D ++  L+ ++P +
Subjt:  DFIVTTLQLILPEN

A0A5D3CEK6 Uncharacterized protein3.1e-0938.89Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N+ IL   +A  P Q  L LSY+L +GSHVPD+ H++RP   + +   +D+ +   G  +P  + ++I++ LT+ESR+LST +  L  RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQ
        D +V  L+
Subjt:  DFIVTTLQ

A0A5D3D6T2 Uncharacterized protein1.4e-0937.72Show/hide
Query:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI
        SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+     G  +   + ++I+++L  ES++LST +  L  RR  +
Subjt:  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLI

Query:  DFIVTTLQLILPEN
        D +V  L+ ++P +
Subjt:  DFIVTTLQLILPEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGGTTCTACTGTTTTGAGGGTTTCTACTCCTTTAAACCCTCCTTCATCTACTTCTCCGACCATTGAACCCTCTTCTCTGCATGTGCTTCCAAACTCTTGTATTCT
TCAGGTTGATGAAGCTCCTAGCCCTTCTCAATCGAAGCTTCAATTGAGTTATAGATTGTCTCAAGGCAGTCATGTTCCTGATATTGTGCACAACATCAGACCTCAATCAG
CTGCTGATCTTCCTCATCCTGATGATCTCCGTAATCCAGATGGTGGGTTATTGATTCCTCTAGCTATTGGAAATCAAATTTTACATGTTCTGACTTTGGAGTCTCGAAGT
TTAAGTACTATTCTCCAAGAGCTCCATGTGCGTCGTCGTCTCATAGACTTCATTGTGACGACTCTCCAGTTGATTCTACCAGAAAATGAGGGAGCCTCAACTTCCAATGG
TGTTGAACCTTCAATCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGGTTCTACTGTTTTGAGGGTTTCTACTCCTTTAAACCCTCCTTCATCTACTTCTCCGACCATTGAACCCTCTTCTCTGCATGTGCTTCCAAACTCTTGTATTCT
TCAGGTTGATGAAGCTCCTAGCCCTTCTCAATCGAAGCTTCAATTGAGTTATAGATTGTCTCAAGGCAGTCATGTTCCTGATATTGTGCACAACATCAGACCTCAATCAG
CTGCTGATCTTCCTCATCCTGATGATCTCCGTAATCCAGATGGTGGGTTATTGATTCCTCTAGCTATTGGAAATCAAATTTTACATGTTCTGACTTTGGAGTCTCGAAGT
TTAAGTACTATTCTCCAAGAGCTCCATGTGCGTCGTCGTCTCATAGACTTCATTGTGACGACTCTCCAGTTGATTCTACCAGAAAATGAGGGAGCCTCAACTTCCAATGG
TGTTGAACCTTCAATCTCTTAG
Protein sequenceShow/hide protein sequence
MCGSTVLRVSTPLNPPSSTSPTIEPSSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRS
LSTILQELHVRRRLIDFIVTTLQLILPENEGASTSNGVEPSIS