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PI0023780 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023780
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr02:12217068..12217340
RNA-Seq ExpressionPI0023780
SyntenyPI0023780
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.9e-1763.01Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENK
        M ++EYEK+F +LAKYAL FV DEVDKCKRF+ G+R EI+APVTA+MD S+ SK+V+ AMRVE  + + K+NK
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENK

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-1554.12Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDAREGFGVHNAS
        MTV EYEKK+T+L+KYA   +VDE ++CKRF+ GLR EI+ PVTA  D +DFSKLVE A+RVE  L E+K  ++A +     ++S
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDAREGFGVHNAS

KAA0062038.1 hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa]1.9e-1666.23Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE
        +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAMRVE  +   K+NK +++
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE

KAA0062762.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]5.0e-1769.44Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKEN
        MTV EYEK FT+LAKYALAFVV+E DKCKRF+ GLR EI+A +T SMD SDFSKLVE  M VE  + E K+N
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKEN

TYK04983.1 uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]1.9e-1666.23Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE
        +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAMRVE  +   K+NK +++
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE

TrEMBL top hitse value%identityAlignment
A0A5A7V373 Uncharacterized protein9.2e-1766.23Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE
        +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAMRVE  +   K+NK +++
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE

A0A5A7V3F2 Zf-CCHC domain-containing protein2.4e-1769.44Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKEN
        MTV EYEK FT+LAKYALAFVV+E DKCKRF+ GLR EI+A +T SMD SDFSKLVE  M VE  + E K+N
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKEN

A0A5D3BB91 Reverse transcriptase1.3e-1554.12Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDAREGFGVHNAS
        MTV EYEKK+T+L+KYA   +VDE ++CKRF+ GLR EI+ PVTA  D +DFSKLVE A+RVE  L E+K  ++A +     ++S
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDAREGFGVHNAS

A0A5D3BZ05 Retrotrans_gag domain-containing protein9.2e-1766.23Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE
        +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAMRVE  +   K+NK +++
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDARE

A0A5D3D2P1 Putative Retrotransposon protein1.4e-1763.01Show/hide
Query:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENK
        M ++EYEK+F +LAKYAL FV DEVDKCKRF+ G+R EI+APVTA+MD S+ SK+V+ AMRVE  + + K+NK
Subjt:  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGTCGTAGAGTATGAAAAGAAATTCACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAGTGGATAAATGCAAACGATTTAAGGGAGGTTTGCGAAT
AGAAATCAAAGCTCCAGTGACGGCGAGCATGGACTTGTCCGATTTCTCCAAATTGGTAGAAGCTGCCATGAGAGTAGAGAATTACCTGGCAGAACAAAAGGAAAACAAGG
ATGCGAGGGAAGGATTCGGCGTCCACAATGCTAGCGCGACATGGCGAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACCGTCGTAGAGTATGAAAAGAAATTCACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAGTGGATAAATGCAAACGATTTAAGGGAGGTTTGCGAAT
AGAAATCAAAGCTCCAGTGACGGCGAGCATGGACTTGTCCGATTTCTCCAAATTGGTAGAAGCTGCCATGAGAGTAGAGAATTACCTGGCAGAACAAAAGGAAAACAAGG
ATGCGAGGGAAGGATTCGGCGTCCACAATGCTAGCGCGACATGGCGAGAATAG
Protein sequenceShow/hide protein sequence
MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDAREGFGVHNASATWRE