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PI0023797 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023797
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:13050805..13051347
RNA-Seq ExpressionPI0023797
SyntenyPI0023797
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043551.1 uncharacterized protein E6C27_scaffold335G00530 [Cucumis melo var. makuwa]2.4e-1635.77Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+ +Y KKF EL +Y +TFIM+E+DK M                                ++KCL + +E+++++G  SSP   R  +KE   E   W  
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC
         +F QGSHW GD+RP   ECG +H G  R +I+CF C
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC

KAA0043557.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]2.8e-0934.17Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+ EY KKF EL +Y +TFIM+E+DK                               ++ ++KCL + +E+++++G  SSP   R  +KE   E   W  
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEEC
         YF QGSHW  D+RP   EC
Subjt:  SYFSQGSHWSGDQRPWCEEC

KAA0054739.1 uncharacterized protein E6C27_scaffold437G00090 [Cucumis melo var. makuwa]6.1e-2040.15Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+  YEKKFT+LVKY +TFI+DE+ K                               ++  +KCLA+G+E+++L+   SSP+  R  +K    EV  WAK
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC
        S FSQ  HW   +RP C+ECG++H   CRHKI+CF C
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC

TYJ99705.1 uncharacterized protein E5676_scaffold562G001040 [Cucumis melo var. makuwa]6.1e-2040.15Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+  YEKKFT+LVKY +TFI+DE+ K                               ++  +KCLA+G+E+++L+   SSP+  R  +K    EV  WAK
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC
        S FSQ  HW   +RP C+ECG++H   CRHKI+CF C
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC

TYK02484.1 Retrotransposon gag protein [Cucumis melo var. makuwa]3.7e-0934.13Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+ EY KKF EL +Y +TFIM+E+DK M                                ++KCL + +E+++++G  SSP   R  +KE   E   W  
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTG
          F QGSHW GD RP     G+Q  G
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTG

TrEMBL top hitse value%identityAlignment
A0A5A7TP59 Zf-CCHC domain-containing protein1.4e-0934.17Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+ EY KKF EL +Y +TFIM+E+DK                               ++ ++KCL + +E+++++G  SSP   R  +KE   E   W  
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEEC
         YF QGSHW  D+RP   EC
Subjt:  SYFSQGSHWSGDQRPWCEEC

A0A5A7TPS8 Retrotrans_gag domain-containing protein1.2e-1635.77Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+ +Y KKF EL +Y +TFIM+E+DK M                                ++KCL + +E+++++G  SSP   R  +KE   E   W  
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC
         +F QGSHW GD+RP   ECG +H G  R +I+CF C
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC

A0A5A7UMQ3 Uncharacterized protein3.0e-2040.15Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+  YEKKFT+LVKY +TFI+DE+ K                               ++  +KCLA+G+E+++L+   SSP+  R  +K    EV  WAK
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC
        S FSQ  HW   +RP C+ECG++H   CRHKI+CF C
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC

A0A5D3BN18 Uncharacterized protein3.0e-2040.15Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+  YEKKFT+LVKY +TFI+DE+ K                               ++  +KCLA+G+E+++L+   SSP+  R  +K    EV  WAK
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDK-------------------------------SMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC
        S FSQ  HW   +RP C+ECG++H   CRHKI+CF C
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNC

A0A5D3BTI8 Retrotransposon gag protein1.8e-0934.13Show/hide
Query:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK
        T+ EY KKF EL +Y +TFIM+E+DK M                                ++KCL + +E+++++G  SSP   R  +KE   E   W  
Subjt:  TIVEYEKKFTELVKYTMTFIMDEDDKSMF-------------------------------VDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAK

Query:  SYFSQGSHWSGDQRPWCEECGRQHTG
          F QGSHW GD RP     G+Q  G
Subjt:  SYFSQGSHWSGDQRPWCEECGRQHTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATCGTAGAGTATGAGAAGAAGTTCACTGAGCTAGTGAAGTACACGATGACCTTCATAATGGACGAGGATGATAAGTCCATGTTCGTTGACAAGTGTTTGGCTAA
AGGAGAGGAAAAGAGAATTTTACAAGGAAATGGGTCAAGTCCAAAGACGAGTAGAGAAGTAGACAAGGAAAGCGGTGATGAAGTAAGCAATTGGGCTAAGTCTTACTTTA
GCCAAGGATCGCATTGGTCTGGCGATCAGAGACCATGGTGTGAAGAGTGTGGAAGGCAACACACAGGAGCTTGTAGGCACAAGATTGTTTGTTTTAATTGTGAACAAGCT
GGACATTATCGAGATGAATGTCAAGCAAGGACCAAAGTTCCAAATAATAATCGAATCTCACACCAAGAACTAGTCTTAATGGCAAGTTCGGATCGATCTCAAGAAGTAGC
CGATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTATCGTAGAGTATGAGAAGAAGTTCACTGAGCTAGTGAAGTACACGATGACCTTCATAATGGACGAGGATGATAAGTCCATGTTCGTTGACAAGTGTTTGGCTAA
AGGAGAGGAAAAGAGAATTTTACAAGGAAATGGGTCAAGTCCAAAGACGAGTAGAGAAGTAGACAAGGAAAGCGGTGATGAAGTAAGCAATTGGGCTAAGTCTTACTTTA
GCCAAGGATCGCATTGGTCTGGCGATCAGAGACCATGGTGTGAAGAGTGTGGAAGGCAACACACAGGAGCTTGTAGGCACAAGATTGTTTGTTTTAATTGTGAACAAGCT
GGACATTATCGAGATGAATGTCAAGCAAGGACCAAAGTTCCAAATAATAATCGAATCTCACACCAAGAACTAGTCTTAATGGCAAGTTCGGATCGATCTCAAGAAGTAGC
CGATTCTTAA
Protein sequenceShow/hide protein sequence
MTIVEYEKKFTELVKYTMTFIMDEDDKSMFVDKCLAKGEEKRILQGNGSSPKTSREVDKESGDEVSNWAKSYFSQGSHWSGDQRPWCEECGRQHTGACRHKIVCFNCEQA
GHYRDECQARTKVPNNNRISHQELVLMASSDRSQEVADS