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PI0023843 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023843
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr06:12611688..12613709
RNA-Seq ExpressionPI0023843
SyntenyPI0023843
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049769.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.7e-3045.21Show/hide
Query:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--
        VED SF  VV+ +W    GVSPL+SLMRNLH  KP+L R FGRHI  LS                                           EEAS+R  
Subjt:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--

Query:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                                +E+RRVLFSMDS K P  DGFS GFFKGAW VVGED  DAVLHFF+ CY+P GVNATAIT IPK
Subjt:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]2.2e-3046.29Show/hide
Query:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEEASI---------------------------------------------R
        VED SF  VV+ +W    GVSPL+SLMRNLH  KP+LRR FGRHI  LSEE  I                                              
Subjt:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEEASI---------------------------------------------R

Query:  C----------DEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
        C          +E+R VLFSMDS K P PDGFS GFFKGAW+V+GE+  DAVLHFF+  Y+  GVNATAIT IPK
Subjt:  C----------DEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

KAA0062331.1 hypothetical protein E6C27_scaffold154G00880 [Cucumis melo var. makuwa]3.0e-3237.89Show/hide
Query:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV
        C  C +FGHS GKCP                                V KSFKQLEEGEI+ S       +N        EGD     L +         
Subjt:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV

Query:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------
         SD  +   S  G       + +D+SF +VVSS WVR   +SPL+SLMRNLH+FKP L RHFG HI  L++E                            
Subjt:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------

Query:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                        A I   E+RRVLFSMDS K    DGFS GFFK  W +V ED  D VLHFF+ CY+P GVNATAIT I K
Subjt:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.7e-3045.21Show/hide
Query:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--
        VED SF  VV+ +W    GVSPL+SLMRNLH  KP+L R FGRHI  LS                                           EEAS+R  
Subjt:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--

Query:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                                +E+RRVLFSMDS K P  DGFS GFFKGAW VVGED  DAVLHFF+ CY+P GVNATAIT IPK
Subjt:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

TYK26644.1 hypothetical protein E5676_scaffold313G002900 [Cucumis melo var. makuwa]3.0e-3237.89Show/hide
Query:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV
        C  C +FGHS GKCP                                V KSFKQLEEGEI+ S       +N        EGD     L +         
Subjt:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV

Query:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------
         SD  +   S  G       + +D+SF +VVSS WVR   +SPL+SLMRNLH+FKP L RHFG HI  L++E                            
Subjt:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------

Query:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                        A I   E+RRVLFSMDS K    DGFS GFFK  W +V ED  D VLHFF+ CY+P GVNATAIT I K
Subjt:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

TrEMBL top hitse value%identityAlignment
A0A5A7U8G1 Non-LTR retroelement reverse transcriptase-like protein8.0e-3145.21Show/hide
Query:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--
        VED SF  VV+ +W    GVSPL+SLMRNLH  KP+L R FGRHI  LS                                           EEAS+R  
Subjt:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--

Query:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                                +E+RRVLFSMDS K P  DGFS GFFKGAW VVGED  DAVLHFF+ CY+P GVNATAIT IPK
Subjt:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

A0A5A7UVV0 Uncharacterized protein1.0e-3046.29Show/hide
Query:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEEASI---------------------------------------------R
        VED SF  VV+ +W    GVSPL+SLMRNLH  KP+LRR FGRHI  LSEE  I                                              
Subjt:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEEASI---------------------------------------------R

Query:  C----------DEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
        C          +E+R VLFSMDS K P PDGFS GFFKGAW+V+GE+  DAVLHFF+  Y+  GVNATAIT IPK
Subjt:  C----------DEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

A0A5A7V9H8 DUF4283 domain-containing protein1.5e-3237.89Show/hide
Query:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV
        C  C +FGHS GKCP                                V KSFKQLEEGEI+ S       +N        EGD     L +         
Subjt:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV

Query:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------
         SD  +   S  G       + +D+SF +VVSS WVR   +SPL+SLMRNLH+FKP L RHFG HI  L++E                            
Subjt:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------

Query:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                        A I   E+RRVLFSMDS K    DGFS GFFK  W +V ED  D VLHFF+ CY+P GVNATAIT I K
Subjt:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein8.0e-3145.21Show/hide
Query:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--
        VED SF  VV+ +W    GVSPL+SLMRNLH  KP+L R FGRHI  LS                                           EEAS+R  
Subjt:  VEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLS-------------------------------------------EEASIR--

Query:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                                +E+RRVLFSMDS K P  DGFS GFFKGAW VVGED  DAVLHFF+ CY+P GVNATAIT IPK
Subjt:  -----------------------CDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

A0A5D3DSV5 DUF4283 domain-containing protein1.5e-3237.89Show/hide
Query:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV
        C  C +FGHS GKCP                                V KSFKQLEEGEI+ S       +N        EGD     L +         
Subjt:  CNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIV

Query:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------
         SD  +   S  G       + +D+SF +VVSS WVR   +SPL+SLMRNLH+FKP L RHFG HI  L++E                            
Subjt:  GSDGGMPIRSPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEE----------------------------

Query:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
                        A I   E+RRVLFSMDS K    DGFS GFFK  W +V ED  D VLHFF+ CY+P GVNATAIT I K
Subjt:  ----------------ASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein2.1e-0744.44Show/hide
Query:  EIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK
        EI   +F+M  +K P PD F+A FF  +W VV + +  AV  FF   ++    NATAIT IPK
Subjt:  EIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVLHFFDACYIPTGVNATAITRIPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAATTCTTGTCATTCTTTTGGTCATTCTGCTGGTAAGTGTCCACATAAGGAAAAGCCTCAGGTGCCAAAGGAGGCGGTTATGAGCAAGGCTGCCTCTGGCATGGG
TGCTGAGCAGGCTATTGTGGCTTGTGAAGATGTGGTGTTAAAATCCTTTAAGCAGTTAGAGGAAGGTGAGATTCAGGGTTCTCCGGTTCAGCATGTGTCTTTGGCTAACA
ACGATGGGTCTTTCTGTTTGAGTGAGGGAGATAATTGGGTGTTGGCATTACGGGTTAGTACGCCTCCACCCTTACAGATTGTGGGCAGTGATGGTGGCATGCCTATTAGG
AGTCCGGATGGTGGTCCGTTGGGGATATGTGTTGATGTGGAGGATACTTCATTTAGTAATGTGGTATCTTCGGTTTGGGTAAGAAGGTTGGGTGTTTCTCCGTTAATGAG
TCTTATGCGGAATTTGCATGACTTTAAACCTGTGCTTCGTAGACATTTTGGTAGGCATATCTGGGGCCTTAGTGAGGAGGCTTCTATTAGGTGTGATGAGATTAGGAGGG
TGTTATTCTCTATGGATAGTAGCAAGACTCCTAGTCCTGATGGTTTTTCGGCAGGGTTCTTCAAAGGGGCTTGGAATGTGGTGGGTGAGGATTCTAGTGATGCTGTTTTG
CATTTCTTTGACGCTTGTTATATTCCTACTGGGGTTAATGCTACTGCAATAACTCGTATCCCCAAACGTTGGTCCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTAATTCTTGTCATTCTTTTGGTCATTCTGCTGGTAAGTGTCCACATAAGGAAAAGCCTCAGGTGCCAAAGGAGGCGGTTATGAGCAAGGCTGCCTCTGGCATGGG
TGCTGAGCAGGCTATTGTGGCTTGTGAAGATGTGGTGTTAAAATCCTTTAAGCAGTTAGAGGAAGGTGAGATTCAGGGTTCTCCGGTTCAGCATGTGTCTTTGGCTAACA
ACGATGGGTCTTTCTGTTTGAGTGAGGGAGATAATTGGGTGTTGGCATTACGGGTTAGTACGCCTCCACCCTTACAGATTGTGGGCAGTGATGGTGGCATGCCTATTAGG
AGTCCGGATGGTGGTCCGTTGGGGATATGTGTTGATGTGGAGGATACTTCATTTAGTAATGTGGTATCTTCGGTTTGGGTAAGAAGGTTGGGTGTTTCTCCGTTAATGAG
TCTTATGCGGAATTTGCATGACTTTAAACCTGTGCTTCGTAGACATTTTGGTAGGCATATCTGGGGCCTTAGTGAGGAGGCTTCTATTAGGTGTGATGAGATTAGGAGGG
TGTTATTCTCTATGGATAGTAGCAAGACTCCTAGTCCTGATGGTTTTTCGGCAGGGTTCTTCAAAGGGGCTTGGAATGTGGTGGGTGAGGATTCTAGTGATGCTGTTTTG
CATTTCTTTGACGCTTGTTATATTCCTACTGGGGTTAATGCTACTGCAATAACTCGTATCCCCAAACGTTGGTCCACTTAA
Protein sequenceShow/hide protein sequence
MCNSCHSFGHSAGKCPHKEKPQVPKEAVMSKAASGMGAEQAIVACEDVVLKSFKQLEEGEIQGSPVQHVSLANNDGSFCLSEGDNWVLALRVSTPPPLQIVGSDGGMPIR
SPDGGPLGICVDVEDTSFSNVVSSVWVRRLGVSPLMSLMRNLHDFKPVLRRHFGRHIWGLSEEASIRCDEIRRVLFSMDSSKTPSPDGFSAGFFKGAWNVVGEDSSDAVL
HFFDACYIPTGVNATAITRIPKRWST