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PI0023852 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023852
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:17305700..17307731
RNA-Seq ExpressionPI0023852
SyntenyPI0023852
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038969.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.7e-3967.63Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DVTAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK
        ESS+TPAVKADDKGK    ES     QQ I   LT++P+
Subjt:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK

KAA0046412.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.2e-3877.39Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TPTS+L +KESHLEVVS+M+IDVTAEATM  ME+KINFLMKVVEER+HEIAALKD MKA E  
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGK
        ESSQT  VK  DKGK
Subjt:  ESSQTPAVKADDKGK

TYK04575.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.2e-3877.39Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQEQG +L KKS EQL+ES KGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DVTAEATM  MERKINFLMKVVEER+HEIAALKD MKA E  
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGK
        ESSQTP VKA DKGK
Subjt:  ESSQTPAVKADDKGK

TYK11178.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.7e-3967.63Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DVTAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK
        ESS+TPAVKADDKGK    ES     QQ I   LT++P+
Subjt:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK

TYK11266.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-3968.09Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DVTAEATM  MERKINFLMKVVEER+HEI ALKD MK +EI 
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGK--FGTFESIVVPFQQKILTIAPKTKR
        ESSQTP VKA DKGK  +G       P Q   +   P TKR
Subjt:  ESSQTPAVKADDKGK--FGTFESIVVPFQQKILTIAPKTKR

TrEMBL top hitse value%identityAlignment
A0A5A7SSD3 Retrotransposon gag protein4.0e-3876.52Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQEQG +L KKS EQL+ES KGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DV AEATM +MERKINFLMKVVEER+HEIAALKD MKA E  
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGK
        ESSQTP VKA DKGK
Subjt:  ESSQTPAVKADDKGK

A0A5A7TCF9 Ty3-gypsy retrotransposon protein4.7e-3967.63Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DVTAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK
        ESS+TPAVKADDKGK    ES     QQ I   LT++P+
Subjt:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK

A0A5A7TSM3 Retrotransposon gag protein4.0e-3877.39Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TPTS+L +KESHLEVVS+M+IDVTAEATM  ME+KINFLMKVVEER+HEIAALKD MKA E  
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGK
        ESSQT  VK  DKGK
Subjt:  ESSQTPAVKADDKGK

A0A5D3CJ11 Ty3-gypsy retrotransposon protein4.7e-3967.63Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DVTAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK
        ESS+TPAVKADDKGK    ES     QQ I   LT++P+
Subjt:  ESSQTPAVKADDKGKFGTFESIVVPFQQKI---LTIAPK

A0A5D3CLH2 Ty3-gypsy retrotransposon protein1.2e-3968.09Show/hide
Query:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV
        M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DVTAEATM  MERKINFLMKVVEER+HEI ALKD MK +EI 
Subjt:  MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIV

Query:  ESSQTPAVKADDKGK--FGTFESIVVPFQQKILTIAPKTKR
        ESSQTP VKA DKGK  +G       P Q   +   P TKR
Subjt:  ESSQTPAVKADDKGK--FGTFESIVVPFQQKILTIAPKTKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAACAAGAACAAGGTTCCATCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCCTTTGTTCGACAACTT
TACTCCTACTTCTGATCTATTAGAGAAAGAATCACACCTTGAAGTAGTGTCTATCATGATAATAGATGTAACAGCTGAGGCAACCATGACAAGGATGGAGAGGAAAATAA
ATTTCCTAATGAAAGTTGTCGAGGAGCGAAATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCTCATGAAATTGTTGAGTCGAGCCAAACTCCTGCTGTTAAAGCT
GATGATAAAGGAAAATTTGGAACTTTCGAATCTATAGTTGTTCCATTCCAACAAAAGATCTTGACGATAGCTCCAAAAACAAAGAGACGGTACACTCCCACCAGAATTAC
AGAGGGGAAAGCAAGACTCACAAAAATAAAGGAAGAAAGAAGATGTGGAAGCCTAAGCACGTGCAGGAGAAAGACGATGACTTCCACCGACCTCAATGACCGCATAGTAG
AAGCCGACAACAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCATGTATCTACCGGTAACTTTGGTAGAATTCCTCCCAAGAAACATCACGTACTCCACT
TCCTCAAATCAAGTGTACACATTCAACCGAAAGAGAATCAGAGGATCAAGTACAAGAGATCGAACCACATCACATCATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAACAAGAACAAGGTTCCATCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCCTTTGTTCGACAACTT
TACTCCTACTTCTGATCTATTAGAGAAAGAATCACACCTTGAAGTAGTGTCTATCATGATAATAGATGTAACAGCTGAGGCAACCATGACAAGGATGGAGAGGAAAATAA
ATTTCCTAATGAAAGTTGTCGAGGAGCGAAATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCTCATGAAATTGTTGAGTCGAGCCAAACTCCTGCTGTTAAAGCT
GATGATAAAGGAAAATTTGGAACTTTCGAATCTATAGTTGTTCCATTCCAACAAAAGATCTTGACGATAGCTCCAAAAACAAAGAGACGGTACACTCCCACCAGAATTAC
AGAGGGGAAAGCAAGACTCACAAAAATAAAGGAAGAAAGAAGATGTGGAAGCCTAAGCACGTGCAGGAGAAAGACGATGACTTCCACCGACCTCAATGACCGCATAGTAG
AAGCCGACAACAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCATGTATCTACCGGTAACTTTGGTAGAATTCCTCCCAAGAAACATCACGTACTCCACT
TCCTCAAATCAAGTGTACACATTCAACCGAAAGAGAATCAGAGGATCAAGTACAAGAGATCGAACCACATCACATCATAATTAA
Protein sequenceShow/hide protein sequence
MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKA
DDKGKFGTFESIVVPFQQKILTIAPKTKRRYTPTRITEGKARLTKIKEERRCGSLSTCRRKTMTSTDLNDRIVEADNNHASFEEVDNSKEIMYLPVTLVEFLPRNITYST
SSNQVYTFNRKRIRGSSTRDRTTSHHN