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PI0023862 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023862
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr12:16880616..16881005
RNA-Seq ExpressionPI0023862
SyntenyPI0023862
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]1.4e-2860.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

TYK17989.1 uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]2.8e-4578.95Show/hide
Query:  MGNEASSSSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSS----TQTLSSSTTITTNPQFED
        M  EASSSSS SKELS+PLFLLTNICNLISIRL STNYTLWKFQFEPML+AHKLYGFID+S P PPKT  ISNPT +S    TQT SSSTT  +NP +ED
Subjt:  MGNEASSSSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSS----TQTLSSSTTITTNPQFED

Query:  WQAKDQALMSLINATLSVEALAYVVGCKPSKQV
        WQAKDQA M LINATLSVEAL YVVGCK S QV
Subjt:  WQAKDQALMSLINATLSVEALAYVVGCKPSKQV

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.4e-2860.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.4e-2860.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]1.4e-2860.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X26.7e-2960.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X36.7e-2960.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X16.7e-2960.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

A0A5D3CLI6 T4.56.7e-2960.66Show/hide
Query:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL
        SSS  K+  +P+FLL+NICNLIS+RL STN+ LWKFQ   +L+AHKLYGFID +NP PP+       TN+S+ T  S+    +NP +EDW AKDQALM++
Subjt:  SSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSL

Query:  INATLSVEALAYVVGCKPSKQV
        INATLS EALAYVVG   SKQV
Subjt:  INATLSVEALAYVVGCKPSKQV

A0A5D3D3T6 Retrotran_gag_3 domain-containing protein1.3e-4578.95Show/hide
Query:  MGNEASSSSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSS----TQTLSSSTTITTNPQFED
        M  EASSSSS SKELS+PLFLLTNICNLISIRL STNYTLWKFQFEPML+AHKLYGFID+S P PPKT  ISNPT +S    TQT SSSTT  +NP +ED
Subjt:  MGNEASSSSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSS----TQTLSSSTTITTNPQFED

Query:  WQAKDQALMSLINATLSVEALAYVVGCKPSKQV
        WQAKDQA M LINATLSVEAL YVVGCK S QV
Subjt:  WQAKDQALMSLINATLSVEALAYVVGCKPSKQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAATGAAGCAAGTTCTTCGTCTTCAATTTCCAAGGAACTATCAGCACCTCTCTTCCTCTTAACCAACATATGCAATTTGATATCCATCCGCCTCGGCTCCACCAA
TTACACACTTTGGAAATTTCAATTCGAACCTATGCTGAGAGCACACAAACTGTATGGATTCATTGACGATTCAAACCCTGCCCCTCCGAAAACCATTTCAATCTCAAATC
CCACAAACTCCTCTACTCAGACCCTTTCATCTTCAACCACCATAACCACAAACCCTCAGTTCGAAGATTGGCAAGCAAAAGATCAAGCGTTAATGTCCCTTATTAACGCT
ACCCTGTCCGTCGAAGCCTTGGCCTACGTTGTTGGATGTAAACCATCAAAACAAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCAATGAAGCAAGTTCTTCGTCTTCAATTTCCAAGGAACTATCAGCACCTCTCTTCCTCTTAACCAACATATGCAATTTGATATCCATCCGCCTCGGCTCCACCAA
TTACACACTTTGGAAATTTCAATTCGAACCTATGCTGAGAGCACACAAACTGTATGGATTCATTGACGATTCAAACCCTGCCCCTCCGAAAACCATTTCAATCTCAAATC
CCACAAACTCCTCTACTCAGACCCTTTCATCTTCAACCACCATAACCACAAACCCTCAGTTCGAAGATTGGCAAGCAAAAGATCAAGCGTTAATGTCCCTTATTAACGCT
ACCCTGTCCGTCGAAGCCTTGGCCTACGTTGTTGGATGTAAACCATCAAAACAAGTCTAG
Protein sequenceShow/hide protein sequence
MGNEASSSSSISKELSAPLFLLTNICNLISIRLGSTNYTLWKFQFEPMLRAHKLYGFIDDSNPAPPKTISISNPTNSSTQTLSSSTTITTNPQFEDWQAKDQALMSLINA
TLSVEALAYVVGCKPSKQV