CuGenDBv2

Gene ID	PI0023863
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	40S ribosomal protein S13
Genome location	chr11:340396..343178
RNA-Seq Expression	PI0023863
Synteny	PI0023863
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004153746.1 40S ribosomal protein S13 [Cucumis sativus]

8.5e-78

100

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_008448906.1 PREDICTED: 40S ribosomal protein S13 [Cucumis melo]

7.2e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKIS+QDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]

3.2e-77

99.34

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_028805045.1 40S ribosomal protein S13 [Prosopis alba]

3.2e-77

99.34

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]

7.2e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKIS+QDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEP4 Ribosomal_S13_N domain-containing protein

4.1e-78

100

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A1S3CBW3 40S ribosomal protein S13

4.1e-78

100

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1CQC4 40S ribosomal protein S13-like

1.6e-77

99.34

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1HJL3 40S ribosomal protein S13-like

1.6e-77

99.34

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1KV63 40S ribosomal protein S13-like

1.6e-77

99.34

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

2.4e-75

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKISSQDV E ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59223 40S ribosomal protein S13-1

5.3e-75

93.38

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59224 40S ribosomal protein S13-2

1.4e-75

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P62302 40S ribosomal protein S13

1.4e-78

97.35

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Q69UI1 40S ribosomal protein S13-2

9.8e-69

86.75

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DV E I K AKKG  PSQIGV+LRD HGI  VKSVTG+KILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

3.8e-76

93.38

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

AT4G00100.1 ribosomal protein S13A

1.0e-76

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTCGTATGCATAGTCGAGGTAAGGGTATTTCAGCTTCCGCACTGCCTTACAAGAGGACGCCGCCTAGTTGGTTGAAGATCTCTTCTCAGGATGTCGCTGAAAACAT
TTGCAAATTTGCCAAGAAGGGTTTGACACCTTCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAAAGTGTAACTGGGAACAAAATTTTGCGTA
TATTGAAGGCTCATGGGCTAGCTCCTGAAATTCCGGAGGATCTTTACCATCTCATTAAGAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGGAAAGATAAGGAT
TCCAAGTTCAGGTTGATTTTAGTCGAGAGCAGGATCCATCGCCTTGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTCTGGAAGTATGAATCCACCACGGCCAG
CACCCTCGTTGCTTAG

mRNA sequence

Show/hide mRNA sequence

CCCAAATCAAAACCAAAACCCTAATAGCCGCCATTGTTTTGCAGTGTTTCCTTTCAGCAAAGGAGCAGACGAAGTTGTAGTGTTCAACCTCTGAGGATCGCCATCCGTCT
CTTCCCCACGCGCCGTCGCCATGGGTCGTATGCATAGTCGAGGTAAGGGTATTTCAGCTTCCGCACTGCCTTACAAGAGGACGCCGCCTAGTTGGTTGAAGATCTCTTCT
CAGGATGTCGCTGAAAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCTTCTCAAATTGGTGTTATTCTCCGTGATTCTCATGGGATTGCTCAGGTCAAAAGTGTAAC
TGGGAACAAAATTTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATTCCGGAGGATCTTTACCATCTCATTAAGAAAGCTGTTTCAATCAGAAAGCATTTGGAGA
GGAACAGGAAAGATAAGGATTCCAAGTTCAGGTTGATTTTAGTCGAGAGCAGGATCCATCGCCTTGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTCTGGAAG
TATGAATCCACCACGGCCAGCACCCTCGTTGCTTAGAAGCAAGTTTTTTATGATTACTAAGAGAAACTAAGGAGTTATTTTGGGGATTCAACTTTTCGTTTAGTACTATG
TTTAATACTTTAATCAGTGCCATCTCTGGGAGTTATCCATCTTTTCCCTCAGTTTGGAGTCATTGAAGTTTTGTTACTCTTATTGCAAATTTGATTTCTGCAATGTTTTT
GTGAATGACTGTTGCTTCTTCAATTGCTCGTACGGGGTGCAAGTGTAAGTGCTTCAAATTCAGCTCAAGTTTTTATTTGCAAAATAATGTTTTCGAAATTGATCAAGGAA
AAATAACCGATACTGAATTTTTACCATTTGGCTTAGAAAGTGATTGACTCGATTAATGCTAGTCCAG

Protein sequence

Show/hide protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

PI0023863 (gene) of Melon (PI 482460) v1 genome