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PI0023870 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023870
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr10:5846115..5847519
RNA-Seq ExpressionPI0023870
SyntenyPI0023870
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.5e-5373.58Show/hide
Query:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV
        R R  STSSKG   SSS NS  SPMSA QY MDLGF+ VTRS++R S IWI SPTESSTPPRPS NL+RPSG V QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTR
          +KRF+PRPEIK+YFQK + +YDP IEPEYQSLTL+E VSKIFP+ FNFL EDL+K +
Subjt:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]9.4e-5677.07Show/hide
Query:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV
        R R  STSSKG+ LSSS NSA SPMSADQYAMDLGF+ VTRS++R SGI I  PTESSTPPRPSANL+RP GRV QM+PPASP SN +SSTPPTTYSQAV
Subjt:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRK
         P+KRF+PRP+IK YFQK + +YDPTIE EYQSLTL+E VSKIFPE FNFL EDLRK
Subjt:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.9e-6277.65Show/hide
Query:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV
        R R  STSSKG+   SS NSA SP+SADQYAMDLGF+TVTR  +RS GIWI SPTESSTPPRPS NL+RPS  V QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKFYEFILVDTK
         P+KRF+PRPEIK+YFQK + +YDP IE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKFYEFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]5.0e-4975.91Show/hide
Query:  MSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKAYFQKQVAIYD
        MSADQYAMDLGF+TVTRS++RSS I IES TESSTPPRPSANL+RP G   QMRPPASP SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK + +YD
Subjt:  MSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKAYFQKQVAIYD

Query:  PTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKF
          IEPEYQS+TL++TVSKIF + FN L EDLRKTR F
Subjt:  PTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKF

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]8.2e-5275.82Show/hide
Query:  RAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAVAP
        RA STSS+G+  SSS NSA SPMSADQYAMDLGF+TVTRS+ARSS I I SPT+SSTPPR SANL+RPS  V QMRP ASPLSN ESSTPPTTYSQ + P
Subjt:  RAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAVAP

Query:  EKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDL
        +KRF+PR EIK+YFQK V +YD  IEPEYQSLTL+ETVSKIFP+ FNFL +DL
Subjt:  EKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDL

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein1.9e-6277.65Show/hide
Query:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV
        R R  STSSKG+   SS NSA SP+SADQYAMDLGF+TVTR  +RS GIWI SPTESSTPPRPS NL+RPS  V QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKFYEFILVDTK
         P+KRF+PRPEIK+YFQK + +YDP IE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKFYEFILVDTK

A0A5D3BM67 Uncharacterized protein2.4e-4975.91Show/hide
Query:  MSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKAYFQKQVAIYD
        MSADQYAMDLGF+TVTRS++RSS I IES TESSTPPRPSANL+RP G   QMRPPASP SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK + +YD
Subjt:  MSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAVAPEKRFIPRPEIKAYFQKQVAIYD

Query:  PTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKF
          IEPEYQS+TL++TVSKIF + FN L EDLRKTR F
Subjt:  PTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKF

A0A5D3DHH1 Uncharacterized protein1.4e-4470.32Show/hide
Query:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESST-PPTTYSQA
        R R  STSSKG+  SSS NS  S +SA QYA+DLGF+ VTRS++R  GIWI S TESSTP RPSANL+RPSG V QMR  ASP SNMESST PPTTYSQA
Subjt:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESST-PPTTYSQA

Query:  VAPEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDE-TVSKIFPEGFNFLSE
        V P+KRF+PRPE K YF+K + +Y PTIE EYQ+LTL+E TVSKIFP+GFNFL E
Subjt:  VAPEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDE-TVSKIFPEGFNFLSE

A0A5D3E4J4 Uncharacterized protein4.6e-5677.07Show/hide
Query:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV
        R R  STSSKG+ LSSS NSA SPMSADQYAMDLGF+ VTRS++R SGI I  PTESSTPPRPSANL+RP GRV QM+PPASP SN +SSTPPTTYSQAV
Subjt:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRK
         P+KRF+PRP+IK YFQK + +YDPTIE EYQSLTL+E VSKIFPE FNFL EDLRK
Subjt:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRK

E5GCE6 Uncharacterized protein7.3e-5473.58Show/hide
Query:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV
        R R  STSSKG   SSS NS  SPMSA QY MDLGF+ VTRS++R S IWI SPTESSTPPRPS NL+RPSG V QMRPPASP SN ESSTPPTTYSQAV
Subjt:  RERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAV

Query:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTR
          +KRF+PRPEIK+YFQK + +YDP IEPEYQSLTL+E VSKIFP+ FNFL EDL+K +
Subjt:  APEKRFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATAGTTCGTGGCAGAGAAAGAGCAATCTCTACCTCTTCAAAGGGCAGCTGCCTATCTTCTTCACTAAATTCTGCACTCTCACCCATGAGTGCGGATCAATATGC
TATGGATTTGGGTTTTTCTACGGTAACCCGATCTAAAGCAAGATCGTCTGGCATATGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAATCTTG
TCCGTCCTTCTGGCAGAGTAACTCAAATGAGGCCTCCTGCCTCTCCTTTATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGCCGTCGCTCCAGAAAAG
CGATTCATACCAAGACCCGAGATAAAAGCATACTTTCAAAAACAAGTGGCAATCTATGATCCTACCATAGAACCAGAATATCAAAGTCTCACTCTGGATGAGACAGTTTC
AAAAATCTTCCCTGAGGGTTTTAATTTTCTTTCAGAAGACCTCAGAAAAACTAGAAAATTTTACGAGTTTATTCTAGTAGACACCAAGTCTATAGAAATAACTCATGTAC
CCGACAAAAATGATCCTTCAAAAATCGAATATTCTAAATTAAAAATTTTGCAATCTATATGA
mRNA sequenceShow/hide mRNA sequence
TTCTCAAACACGCAACTACCGTGCGCTAGATTAGAAAATAGTAATCTAGTTTGGTGATCACACCTACATTTGAGGGGTTATGCCCAAGAAAGAATATAATCGACTAGAAT
GAATAATAAGGATTACAAGTGACAACTTATCTTTCAATAATCTTGAACAACAGCAAGATTCAACTAGCGATCACTTAAGCTATTCCCTAAATAGTTGCAGCTTGATTGAT
TCTCCTTTGAAGTATCAAGCTCCCCTCAATAGTTCACTCTAGACTTATGGGATATTTAGGCTCCTCCTAAATACTTGAACTCTTCTTTTCTGATAATGATAAACAAGTTG
TTTCGAACAAATGTTGTGTCTATGATTCAGTATGTAAACTTCGTACATAGGATAATAAACAAATATGTAGAATTCTTTCAGTCTCAAGTTCTTTTCTAACACAATACACT
ATTCTGCATGACCCAATAAAAAATTTGTAATTAAAACCGATTCAAGAGCCTCAAAGTTTGTTTTAGAAAAAGATGTAAAATATCTTGTTTCCAAACAAATTTTTGCCAGA
TGGCAAGCCATATTATCTTGTTTTGACTTCAAAGTTTTGCCTATAAAAGGGAAACAAAATGCTTTGGCTAACTACCTCTCAAGGGAGTTTCTAACTCCAAAGTTCTCTCT
CCTTTCTAAAAATACTCCTAGAGAAAAATGAGCATAGTTCGTGGCAGAGAAAGAGCAATCTCTACCTCTTCAAAGGGCAGCTGCCTATCTTCTTCACTAAATTCTGCACT
CTCACCCATGAGTGCGGATCAATATGCTATGGATTTGGGTTTTTCTACGGTAACCCGATCTAAAGCAAGATCGTCTGGCATATGGATTGAATCTCCCACGGAGTCTTCCA
CTCCACCTAGGCCTTCGGCCAATCTTGTCCGTCCTTCTGGCAGAGTAACTCAAATGAGGCCTCCTGCCTCTCCTTTATCAAATATGGAGTCATCTACTCCTCCTACGACG
TATTCTCAGGCCGTCGCTCCAGAAAAGCGATTCATACCAAGACCCGAGATAAAAGCATACTTTCAAAAACAAGTGGCAATCTATGATCCTACCATAGAACCAGAATATCA
AAGTCTCACTCTGGATGAGACAGTTTCAAAAATCTTCCCTGAGGGTTTTAATTTTCTTTCAGAAGACCTCAGAAAAACTAGAAAATTTTACGAGTTTATTCTAGTAGACA
CCAAGTCTATAGAAATAACTCATGTACCCGACAAAAATGATCCTTCAAAAATCGAATATTCTAAATTAAAAATTTTGCAATCTATATGAAGAGTTTATTCTCTTTAAATA
CCGAATTTAAAGAAAATCTTTGTGTCAAAGTTGTTGAAAGAAGAATCCCAGTTTATGGGAAAATTGATTCCATATAACTATTTCC
Protein sequenceShow/hide protein sequence
MSIVRGRERAISTSSKGSCLSSSLNSALSPMSADQYAMDLGFSTVTRSKARSSGIWIESPTESSTPPRPSANLVRPSGRVTQMRPPASPLSNMESSTPPTTYSQAVAPEK
RFIPRPEIKAYFQKQVAIYDPTIEPEYQSLTLDETVSKIFPEGFNFLSEDLRKTRKFYEFILVDTKSIEITHVPDKNDPSKIEYSKLKILQSI