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PI0023880 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023880
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:11147625..11147870
RNA-Seq ExpressionPI0023880
SyntenyPI0023880
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0006412 - translation (biological process)
GO:0034470 - ncRNA processing (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056667.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2781.01Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN
        MGSQ A+D EEDDMDINLEDFDIPNPHGLEPPSGEDM S PTSMAHD GSSRPSKK+     GPH HISR+YAR+FQGN
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN

KAA0063789.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-2290.32Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLG
        MGSQIAKD EEDDMDINLEDFDIPNPHGL+PPSGEDM+S PTSMAHD GSSRPSKKRRSY G
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLG

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-2291.67Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY
        MG QIA+D EEDDMDINLEDFDIPNPHGLEPPSGEDMSS PTSMAHDVGSS+PSKKRRSY
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]7.9e-2291.67Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY
        MG QIA+D EEDDMDINLEDFDIPNPHGLEPPSGEDMSS PTSMAHDVGSS+PSKKRRSY
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.3e-2781.01Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN
        MGSQ A+D EEDDMDINLEDFDIPNPHGLEPPSGEDM S PTSMAHD GSSRPSKK+     GPH HISR+YAR+FQGN
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN

TrEMBL top hitse value%identityAlignment
A0A1S3CC17 uncharacterized protein LOC1034992483.8e-2291.67Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY
        MG QIA+D EEDDMDINLEDFDIPNPHGLEPPSGEDMSS PTSMAHDVGSS+PSKKRRSY
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY

A0A1S3CI24 uncharacterized protein At2g29880-like6.1e-2881.01Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN
        MGSQ A+D EEDDMDINLEDFDIPNPHGLEPPSGEDM S PTSMAHD GSSRPSKK+     GPH HISR+YAR+FQGN
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN

A0A5A7VE44 Retrotransposon protein1.0e-2290.32Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLG
        MGSQIAKD EEDDMDINLEDFDIPNPHGL+PPSGEDM+S PTSMAHD GSSRPSKKRRSY G
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLG

A0A5A7VGQ0 Retrotransposon protein3.8e-2291.67Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY
        MG QIA+D EEDDMDINLEDFDIPNPHGLEPPSGEDMSS PTSMAHDVGSS+PSKKRRSY
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSY

A0A5D3C2H8 Retrotransposon protein6.1e-2881.01Show/hide
Query:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN
        MGSQ A+D EEDDMDINLEDFDIPNPHGLEPPSGEDM S PTSMAHD GSSRPSKK+     GPH HISR+YAR+FQGN
Subjt:  MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCACAAATTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAGATTTTGATATTCCAAATCCACATGGACTCGAGCCACCATCGGGGGAGGACAT
GTCATCTGCTCCAACAAGTATGGCACATGATGTAGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTTAGGGGGACCTCATGTACACATTTCGCGTAGGTATGCGA
GAAGCTTCCAAGGAAATTGGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCACAAATTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAGATTTTGATATTCCAAATCCACATGGACTCGAGCCACCATCGGGGGAGGACAT
GTCATCTGCTCCAACAAGTATGGCACATGATGTAGGATCATCTAGGCCAAGTAAGAAAAGACGGTCATATTTAGGGGGACCTCATGTACACATTTCGCGTAGGTATGCGA
GAAGCTTCCAAGGAAATTGGAAATAG
Protein sequenceShow/hide protein sequence
MGSQIAKDIEEDDMDINLEDFDIPNPHGLEPPSGEDMSSAPTSMAHDVGSSRPSKKRRSYLGGPHVHISRRYARSFQGNWK