CuGenDBv2

Gene ID	PI0023885
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
Genome location	chr11:24467559..24470916
RNA-Seq Expression	PI0023885
Synteny	PI0023885
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005681 - spliceosomal complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576064.1 Chromatin modification-related protein MEAF6, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-21

67.86

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Query:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS
        S +  QADK E+NG+KY ISENMR EMEYN D AWYD  EGNTMFDADSSSF+FGDD AFQKKE ELAKRL+     ++  S S
Subjt:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS

KAG7014582.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.9e-21

67.86

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Query:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS
        S +  QADK E+NG+KY ISENMR EMEYN D AWYD  EGNTMFDADSSSF+FGDD AFQKKE ELAKRL+     ++  S S
Subjt:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS

XP_004148974.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Cucumis sativus]

5.7e-25

85.14

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI
        EDSQQ SQADK ELNGSK+ ISENMRLEMEYN D AWYD  EGNTMFDADSSSFFFGDD AFQKKE ELAKRL+
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI

XP_008451253.1 PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Cucumis melo]

1.5e-25

86.49

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI
        EDSQQ SQADK ELNGSKY ISENMRLEMEYN D AWYD  EGNTMFDADSSSFFFGDD AFQKKE ELAKRL+
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI

XP_038897203.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Benincasa hispida]

6.4e-24

82.43

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI
        EDSQQ S  DK ELNG+KY ISENMRLEMEYN D AWYD  EGNTMFDADSSSFFFGDD AFQKKE ELAKRL+
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K5G4 Uncharacterized protein

2.8e-25

85.14

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI
        EDSQQ SQADK ELNGSK+ ISENMRLEMEYN D AWYD  EGNTMFDADSSSFFFGDD AFQKKE ELAKRL+
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI

A0A1S3BS44 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

7.3e-26

86.49

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI
        EDSQQ SQADK ELNGSKY ISENMRLEMEYN D AWYD  EGNTMFDADSSSFFFGDD AFQKKE ELAKRL+
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI

A0A5D3CA03 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

7.3e-26

86.49

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI
        EDSQQ SQADK ELNGSKY ISENMRLEMEYN D AWYD  EGNTMFDADSSSFFFGDD AFQKKE ELAKRL+
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLI

A0A6J1GNB0 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

5.4e-21

66.67

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Query:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS
        S +  Q DK E+NG+KY ISENMR EMEYN D AWYD  EGNTMFDADSSSF+FGDD AFQKKE ELAKRL+     ++  S S
Subjt:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS

A0A6J1JV66 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1

5.4e-21

66.67

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Query:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS
        S +  Q DK E+NG+KY ISENMR EMEYN D AWYD  EGNTMFDADSSSF+FGDD AFQKKE ELAKRL+     ++  S S
Subjt:  SQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPS

SwissProt top hits

e value

%identity

Alignment

F4K2E9 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

1.3e-16

50.5

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPSGDAQTWRYRKYRVD
        ED  QG++  K E       I+E MR+EMEY  D AWYDT EGN++FDADS+SFF GDD + QKKE ELAKRL+     R   S    AQ+ +Y +   D
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPSGDAQTWRYRKYRVD

Query:  N
        N
Subjt:  N

Arabidopsis top hits

e value

%identity

Alignment

AT5G13010.1 RNA helicase family protein

9.5e-18

50.5

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Query:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPSGDAQTWRYRKYRVD
        ED  QG++  K E       I+E MR+EMEY  D AWYDT EGN++FDADS+SFF GDD + QKKE ELAKRL+     R   S    AQ+ +Y +   D
Subjt:  EDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPSGDAQTWRYRKYRVD

Query:  N
        N
Subjt:  N

Sequences

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CDS sequence

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ATGGCTAAGGTACCGACTCCCATTTACGCAGCAAAAGAGGATTCTCAACAAGGTTCTCAGGCAGACAAGTTCGAGTTAAATGGATCCAAGTATGGGATCAGTGAGAACAT
GCGTTTGGAAATGGAATACAACATTGACTGGGCTTGGTATGATACATATGAAGGTAATACAATGTTTGATGCTGATAGCTCATCATTTTTCTTTGGAGATGATGTTGCCT
TCCAGAAGAAAGAAGGGGAGCTGGCCAAAAGATTGATATGTTCAACAGCTCAGAGAATAAGAAGATCTCCAAGTGGTGATGCCCAAACTTGGCGTTATAGAAAATACAGA
GTCGACAACGGATGTCATCCACTCCATCTGCTGCAAGCTGCTATTGAATTAAACCTAACATTTGGGGCTTGGGTTCAGTAG

mRNA sequence

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Protein sequence

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MAKVPTPIYAAKEDSQQGSQADKFELNGSKYGISENMRLEMEYNIDWAWYDTYEGNTMFDADSSSFFFGDDVAFQKKEGELAKRLICSTAQRIRRSPSGDAQTWRYRKYR
VDNGCHPLHLLQAAIELNLTFGAWVQ

PI0023885 (gene) of Melon (PI 482460) v1 genome