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PI0023892 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023892
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:12927813..12928440
RNA-Seq ExpressionPI0023892
SyntenyPI0023892
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035763.1 hypothetical protein E6C27_scaffold403G00380 [Cucumis melo var. makuwa]2.3e-1667.09Show/hide
Query:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV
        +LKSS N IKA LDSM  NNEE D+DDF  HR GRG +EEGLD N VVALQGQM  MNNLL+ + + QVNV SSS Q V
Subjt:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV

KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]2.5e-2370.24Show/hide
Query:  SSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAVNQVDDMGC
        SSYN I   LDS+AINNEEWD+D F  HRGGRG +EEGLD+NV+V  QGQM AMNNLL+LM  LQVN ASSS Q+V QVD++GC
Subjt:  SSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAVNQVDDMGC

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]2.6e-2051.35Show/hide
Query:  FWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCH------RGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSI
        F   + T Q+A+ VF GG+L+SSYN IK MLD+MA N++EW ++ FG        +G RG  E+G+D +++VALQGQ+I M N+L+ MA+LQVNV  SS+
Subjt:  FWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCH------RGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSI

Query:  QAVNQVDDMGC
        Q V QV++MGC
Subjt:  QAVNQVDDMGC

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]4.5e-2051.24Show/hide
Query:  LVNNCPNNG--------GVLFWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLK
        LV  CP +G           F   + T Q  +T+FVGG+L+SSYN IKA LDSM+ N++EWD+  FG     RG ++EGLD++VVV LQGQMIAMNNLL+
Subjt:  LVNNCPNNG--------GVLFWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLK

Query:  LMAILQVNVASSSIQAVNQVD
         M + QVN A++ I AV QV+
Subjt:  LMAILQVNVASSSIQAVNQVD

TYK29856.1 hypothetical protein E5676_scaffold208G001000 [Cucumis melo var. makuwa]7.9e-1768.35Show/hide
Query:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV
        +LKSS N IKA LDSM  NNEE D+DDF  HR GRG +EEGLD N VVALQGQM AMNNLL+ + + QVNV SSS Q V
Subjt:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein2.2e-2051.24Show/hide
Query:  LVNNCPNNG--------GVLFWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLK
        LV  CP +G           F   + T Q  +T+FVGG+L+SSYN IKA LDSM+ N++EWD+  FG     RG ++EGLD++VVV LQGQMIAMNNLL+
Subjt:  LVNNCPNNG--------GVLFWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLK

Query:  LMAILQVNVASSSIQAVNQVD
         M + QVN A++ I AV QV+
Subjt:  LMAILQVNVASSSIQAVNQVD

A0A5A7SYS5 Uncharacterized protein1.1e-1667.09Show/hide
Query:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV
        +LKSS N IKA LDSM  NNEE D+DDF  HR GRG +EEGLD N VVALQGQM  MNNLL+ + + QVNV SSS Q V
Subjt:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV

A0A5D3CC26 Uncharacterized protein1.3e-2051.35Show/hide
Query:  FWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCH------RGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSI
        F   + T Q+A+ VF GG+L+SSYN IK MLD+MA N++EW ++ FG        +G RG  E+G+D +++VALQGQ+I M N+L+ MA+LQVNV  SS+
Subjt:  FWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCH------RGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSI

Query:  QAVNQVDDMGC
        Q V QV++MGC
Subjt:  QAVNQVDDMGC

A0A5D3CSC7 Uncharacterized protein1.2e-2370.24Show/hide
Query:  SSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAVNQVDDMGC
        SSYN I   LDS+AINNEEWD+D F  HRGGRG +EEGLD+NV+V  QGQM AMNNLL+LM  LQVN ASSS Q+V QVD++GC
Subjt:  SSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAVNQVDDMGC

A0A5D3E1V8 Uncharacterized protein3.8e-1768.35Show/hide
Query:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV
        +LKSS N IKA LDSM  NNEE D+DDF  HR GRG +EEGLD N VVALQGQM AMNNLL+ + + QVNV SSS Q V
Subjt:  ILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQMIAMNNLLKLMAILQVNVASSSIQAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGCGCGTTCTGGATTCGAACTTGCGACCTTGAGGTGGATGCGTGGGGCCCTGTGGATACGACATGTGGCGTGCTGGTCAATAATTGCCCCAACAATGGAGGTGT
TTTATTTTGGGCTGAACAAGGAACACAGCAAACTGCTGACACTGTGTTTGTAGGGGGAATACTAAAAAGTTCTTACAACCATATTAAAGCTATGTTAGACTCTATGGCCA
TCAACAATGAAGAATGGGATGAAGATGATTTCGGCTGTCACCGAGGAGGAAGAGGAACTAGCGAGGAAGGATTGGATCAAAACGTTGTTGTGGCATTACAAGGCCAAATG
ATTGCAATGAACAATCTGCTGAAATTGATGGCGATATTGCAAGTTAATGTAGCGAGCAGCTCAATTCAGGCGGTCAATCAGGTGGACGATATGGGATGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGCGCGTTCTGGATTCGAACTTGCGACCTTGAGGTGGATGCGTGGGGCCCTGTGGATACGACATGTGGCGTGCTGGTCAATAATTGCCCCAACAATGGAGGTGT
TTTATTTTGGGCTGAACAAGGAACACAGCAAACTGCTGACACTGTGTTTGTAGGGGGAATACTAAAAAGTTCTTACAACCATATTAAAGCTATGTTAGACTCTATGGCCA
TCAACAATGAAGAATGGGATGAAGATGATTTCGGCTGTCACCGAGGAGGAAGAGGAACTAGCGAGGAAGGATTGGATCAAAACGTTGTTGTGGCATTACAAGGCCAAATG
ATTGCAATGAACAATCTGCTGAAATTGATGGCGATATTGCAAGTTAATGTAGCGAGCAGCTCAATTCAGGCGGTCAATCAGGTGGACGATATGGGATGCTAG
Protein sequenceShow/hide protein sequence
MGGAFWIRTCDLEVDAWGPVDTTCGVLVNNCPNNGGVLFWAEQGTQQTADTVFVGGILKSSYNHIKAMLDSMAINNEEWDEDDFGCHRGGRGTSEEGLDQNVVVALQGQM
IAMNNLLKLMAILQVNVASSSIQAVNQVDDMGC