; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023936 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023936
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:12499505..12499780
RNA-Seq ExpressionPI0023936
SyntenyPI0023936
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.0e-1764.38Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNK
        M ++EYEK F ELAKY L FV DE DKCK FE+G+RT+IRA +T NMDWS+ SK+V+ AMRVEK +  +KKNK
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNK

KAA0062038.1 hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa]5.4e-1960.23Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR
        + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AMRVE+C+  +KKNK + + PC Q+  ++R
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR

KAA0062762.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]3.6e-2363.74Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE
        M V EYEK F ELAKY LAFV++E DKCK FE+GLRT+IRAL+T +MDWSDFSKLVE  M VEKC+ ++KKN    + PC Q+ S++R GE
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE

TYK04983.1 uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]5.4e-1960.23Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR
        + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AMRVE+C+  +KKNK + + PC Q+  ++R
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR

TYK21986.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]2.0e-1361.43Show/hide
Query:  IDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE
        +DE DKCK F+DGL+T+IRAL+   M+ SDFSKLVE A+RVE+C+A EKKNK   E PC Q+ S +RG E
Subjt:  IDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE

TrEMBL top hitse value%identityAlignment
A0A5A7V373 Uncharacterized protein2.6e-1960.23Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR
        + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AMRVE+C+  +KKNK + + PC Q+  ++R
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR

A0A5A7V3F2 Zf-CCHC domain-containing protein1.7e-2363.74Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE
        M V EYEK F ELAKY LAFV++E DKCK FE+GLRT+IRAL+T +MDWSDFSKLVE  M VEKC+ ++KKN    + PC Q+ S++R GE
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE

A0A5D3BZ05 Retrotrans_gag domain-containing protein2.6e-1960.23Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR
        + V  YEK F ELAKY LAFV+DETDKCK FE+GL+T+I AL+TT+MD   FSKLVE AMRVE+C+  +KKNK + + PC Q+  ++R
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVR

A0A5D3D2P1 Putative Retrotransposon protein1.4e-1764.38Show/hide
Query:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNK
        M ++EYEK F ELAKY L FV DE DKCK FE+G+RT+IRA +T NMDWS+ SK+V+ AMRVEK +  +KKNK
Subjt:  MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNK

A0A5D3DEF9 RNA-directed DNA polymerase-like protein9.6e-1461.43Show/hide
Query:  IDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE
        +DE DKCK F+DGL+T+IRAL+   M+ SDFSKLVE A+RVE+C+A EKKNK   E PC Q+ S +RG E
Subjt:  IDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTCGTAGAGTATGAGAAAATTTTTGCTGAATTGGCTAAGTATGTGTTAGCCTTTGTGATTGATGAGACAGATAAATGCAAATGGTTTGAAGATGGTTTGCGAAC
GAAAATTAGAGCCCTAATGACGACCAACATGGACTGGTCAGATTTCTCCAAATTAGTTGAAACTGCCATGAGAGTTGAGAAGTGTTTGGCAAAGGAAAAGAAAAACAAGA
ATGCAAATGAAGGCCCATGCGTTCAAAATGGTAGTAACGTGCGAGGTGGTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGTCGTAGAGTATGAGAAAATTTTTGCTGAATTGGCTAAGTATGTGTTAGCCTTTGTGATTGATGAGACAGATAAATGCAAATGGTTTGAAGATGGTTTGCGAAC
GAAAATTAGAGCCCTAATGACGACCAACATGGACTGGTCAGATTTCTCCAAATTAGTTGAAACTGCCATGAGAGTTGAGAAGTGTTTGGCAAAGGAAAAGAAAAACAAGA
ATGCAAATGAAGGCCCATGCGTTCAAAATGGTAGTAACGTGCGAGGTGGTGAGTGA
Protein sequenceShow/hide protein sequence
MIVVEYEKIFAELAKYVLAFVIDETDKCKWFEDGLRTKIRALMTTNMDWSDFSKLVETAMRVEKCLAKEKKNKNANEGPCVQNGSNVRGGE