CuGenDBv2

Gene ID	PI0023949
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Cytochrome b559 subunit alpha
Genome location	tig00003626:1036081..1036332
RNA-Seq Expression	PI0023949
Synteny	PI0023949
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0016485 - protein processing (biological process) GO:0005777 - peroxisome (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009539 - photosystem II reaction center (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0004252 - serine-type endopeptidase activity (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR006216 - Photosystem II cytochrome b559, conserved site IPR006217 - Photosystem II cytochrome b559, alpha subunit IPR013081 - Photosystem II cytochrome b559, N-terminal IPR013082 - Photosystem II cytochrome b559, alpha subunit, lumenal region IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QBS31917.1 cytochrome b559 alpha chain [Dipteronia sinensis]

1.8e-37

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

QFQ47900.1 photosystem II cytochrome b559 alpha subunit [Sonerila parviflora]

1.4e-37

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

QJT42880.1 photosystem II protein V [Opuntia quimilo]

1.8e-37

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

TYI97217.1 hypothetical protein E1A91_D01G127700v1 [Gossypium mustelinum]

1.8e-37

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

YP_010142087.1 photosystem II protein V [Muntingia calabura]

1.8e-37

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

TrEMBL top hits

e value

%identity

Alignment

A0A0U2T221 Cytochrome b559 subunit alpha

8.7e-38

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

A0A1U9YE75 Cytochrome b559 subunit alpha

8.7e-38

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

A0A1Z1CEE6 Cytochrome b559 subunit alpha

8.7e-38

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

A0A218KG52 Cytochrome b559 subunit alpha

8.7e-38

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

A0A5P8GXZ2 Cytochrome b559 subunit alpha

6.6e-38

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

SwissProt top hits

e value

%identity

Alignment

P56779 Cytochrome b559 subunit alpha

2.4e-40

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

P59702 Cytochrome b559 subunit alpha

2.4e-40

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

P69382 Cytochrome b559 subunit alpha

2.4e-40

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Q4VZH5 Cytochrome b559 subunit alpha

2.4e-40

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Q70XY9 Cytochrome b559 subunit alpha

2.4e-40

97.59

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00580.1 photosystem II reaction center protein E

6.3e-41

96.39

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIAG LFVSTGLAYD+FGSPRPNEYFTESRQGIPLITGRFD LEQLDEFSRSF
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

Sequences

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CDS sequence

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ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGGTTGCTTATT
CGTCAGCACGGGTTTAGCTTACGATCTTTTTGGAAGCCCTCGTCCAAATGAGTATTTTACAGAGAGCCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGG
AACAACTCGATGAATTTAGTAGATCTTTTTAG

mRNA sequence

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Protein sequence

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MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGCLFVSTGLAYDLFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

PI0023949 (gene) of Melon (PI 482460) v1 genome