; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0023953 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023953
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:6953482..6954039
RNA-Seq ExpressionPI0023953
SyntenyPI0023953
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-3746.74Show/hide
Query:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVE-IPMMTG-----------------------SSGSKRKWGGQTAKTVEI
        ++ + F +YDELSYVFGKDR  G R E+FAD+ SN P  Y+ F  DD ++ + +PM +                        SSGSKRK  G    + +I
Subjt:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVE-IPMMTG-----------------------SSGSKRKWGGQTAKTVEI

Query:  IRNAMDFANDQLKAIAEWPNLQRQDERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN
        +R AM++ N+QL  IAEWP LQRQD   +R E++ QL+ IP+L+  DR  LMRI++RNV+DMKAFLEVPD +K  YC++IL+EN
Subjt:  IRNAMDFANDQLKAIAEWPNLQRQDERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-3855.97Show/hide
Query:  ETFADVWSNVPGRYEGFPTDDGNNVEIPMM------------------------TGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDE
        ETF DV SN P  YEGF  DDGN++EIPMM                        TGSSGSKRK GGQ  +T+EIIRN M+ +ND+LKAI EW N+QRQD 
Subjt:  ETFADVWSNVPGRYEGFPTDDGNNVEIPMM------------------------TGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDE

Query:  RASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA
         A   EV+ QLQ IP+LS  DRV  M+IL+ NV+DMKAFL++ DELKLDYCT+I ++NA
Subjt:  RASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA

KAA0064259.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-3853.75Show/hide
Query:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQ
        ++ + F +YDELSYVFGKDR  G R E+FADV SN P  YE F  D   + +   M  SSGSKRK  GQ A + +I+R A+++ N+QL  IA+W  LQRQ
Subjt:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQ

Query:  DERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN
        D   +R EV+ QL  IP+L+  DR  LMRIL+ NV+DMKAFLEVPD +K  YC++IL+EN
Subjt:  DERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN

KAA0065601.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-4363.23Show/hide
Query:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR
        +FGK R   A  ETF DV SNV   YEGFP +DGN+ EIPM+ G        SS SKRKWG QT +TV+II NA+++ N QLKAIA+  N+QRQ + ASR
Subjt:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR

Query:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA
        AEV+SQLQGIPKLSTRDRV L+ I++ NV++M+AFLEVPDELKLDYCT +LE+NA
Subjt:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA

TYK07171.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-4262.58Show/hide
Query:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR
        +FGK     A  ETF DV SNV   YEGFP +DGN+ EIPM+ G        SS SKRKWG QT +TV+II NA+++ N QLKAIA+  N+QRQ + ASR
Subjt:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR

Query:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA
        AEV+SQLQGIPKLSTRDRV L+ I++ NV++M+AFLEVPDELKLDYCT +LE+NA
Subjt:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA

TrEMBL top hitse value%identityAlignment
A0A5A7TYQ6 Retrotransposon protein9.9e-3846.74Show/hide
Query:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVE-IPMMTG-----------------------SSGSKRKWGGQTAKTVEI
        ++ + F +YDELSYVFGKDR  G R E+FAD+ SN P  Y+ F  DD ++ + +PM +                        SSGSKRK  G    + +I
Subjt:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVE-IPMMTG-----------------------SSGSKRKWGGQTAKTVEI

Query:  IRNAMDFANDQLKAIAEWPNLQRQDERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN
        +R AM++ N+QL  IAEWP LQRQD   +R E++ QL+ IP+L+  DR  LMRI++RNV+DMKAFLEVPD +K  YC++IL+EN
Subjt:  IRNAMDFANDQLKAIAEWPNLQRQDERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN

A0A5A7V469 Retrotransposon protein4.4e-3855.97Show/hide
Query:  ETFADVWSNVPGRYEGFPTDDGNNVEIPMM------------------------TGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDE
        ETF DV SN P  YEGF  DDGN++EIPMM                        TGSSGSKRK GGQ  +T+EIIRN M+ +ND+LKAI EW N+QRQD 
Subjt:  ETFADVWSNVPGRYEGFPTDDGNNVEIPMM------------------------TGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDE

Query:  RASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA
         A   EV+ QLQ IP+LS  DRV  M+IL+ NV+DMKAFL++ DELKLDYCT+I ++NA
Subjt:  RASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA

A0A5A7VFF1 Retrotransposon protein5.2e-3953.75Show/hide
Query:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQ
        ++ + F +YDELSYVFGKDR  G R E+FADV SN P  YE F  D   + +   M  SSGSKRK  GQ A + +I+R A+++ N+QL  IA+W  LQRQ
Subjt:  MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQ

Query:  DERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN
        D   +R EV+ QL  IP+L+  DR  LMRIL+ NV+DMKAFLEVPD +K  YC++IL+EN
Subjt:  DERASRAEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEEN

A0A5A7VIQ2 Retrotransposon protein3.5e-4363.23Show/hide
Query:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR
        +FGK R   A  ETF DV SNV   YEGFP +DGN+ EIPM+ G        SS SKRKWG QT +TV+II NA+++ N QLKAIA+  N+QRQ + ASR
Subjt:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR

Query:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA
        AEV+SQLQGIPKLSTRDRV L+ I++ NV++M+AFLEVPDELKLDYCT +LE+NA
Subjt:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA

A0A5D3C5I7 Retrotransposon protein3.0e-4262.58Show/hide
Query:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR
        +FGK     A  ETF DV SNV   YEGFP +DGN+ EIPM+ G        SS SKRKWG QT +TV+II NA+++ N QLKAIA+  N+QRQ + ASR
Subjt:  VFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTG--------SSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASR

Query:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA
        AEV+SQLQGIPKLSTRDRV L+ I++ NV++M+AFLEVPDELKLDYCT +LE+NA
Subjt:  AEVISQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAACAACTGTTTCCCTATTATGACGAGCTGAGCTACGTGTTCGGAAAAGATCGTGATATAGGAGCACGCACAGAGACGTTCGCCGATGTGTGGTCGAATGTGCC
TGGAAGGTACGAAGGATTTCCCACTGACGATGGAAACAATGTGGAGATCCCTATGATGACTGGTTCAAGCGGATCGAAGAGGAAGTGGGGAGGCCAGACTGCAAAGACTG
TGGAAATCATTCGCAATGCAATGGACTTCGCGAATGACCAGCTGAAGGCCATTGCAGAATGGCCTAATTTGCAACGTCAAGATGAACGTGCTTCTCGTGCAGAAGTCATT
AGCCAGTTGCAGGGGATCCCTAAATTGAGTACCCGCGATAGGGTGCACCTTATGCGGATACTGATACGCAATGTGAATGACATGAAAGCATTCTTGGAGGTACCCGATGA
GCTTAAGTTGGACTACTGCACGGTCATTCTCGAAGAGAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAACAACTGTTTCCCTATTATGACGAGCTGAGCTACGTGTTCGGAAAAGATCGTGATATAGGAGCACGCACAGAGACGTTCGCCGATGTGTGGTCGAATGTGCC
TGGAAGGTACGAAGGATTTCCCACTGACGATGGAAACAATGTGGAGATCCCTATGATGACTGGTTCAAGCGGATCGAAGAGGAAGTGGGGAGGCCAGACTGCAAAGACTG
TGGAAATCATTCGCAATGCAATGGACTTCGCGAATGACCAGCTGAAGGCCATTGCAGAATGGCCTAATTTGCAACGTCAAGATGAACGTGCTTCTCGTGCAGAAGTCATT
AGCCAGTTGCAGGGGATCCCTAAATTGAGTACCCGCGATAGGGTGCACCTTATGCGGATACTGATACGCAATGTGAATGACATGAAAGCATTCTTGGAGGTACCCGATGA
GCTTAAGTTGGACTACTGCACGGTCATTCTCGAAGAGAATGCTTGA
Protein sequenceShow/hide protein sequence
MVKQLFPYYDELSYVFGKDRDIGARTETFADVWSNVPGRYEGFPTDDGNNVEIPMMTGSSGSKRKWGGQTAKTVEIIRNAMDFANDQLKAIAEWPNLQRQDERASRAEVI
SQLQGIPKLSTRDRVHLMRILIRNVNDMKAFLEVPDELKLDYCTVILEENA