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PI0023955 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023955
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:1152505..1158615
RNA-Seq ExpressionPI0023955
SyntenyPI0023955
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]3.4e-2082.09Show/hide
Query:  MPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ
        MPPP A  +VINHNDNQ EGDG DGLDDDQVTLL E RR GH VVR +GRGRAYQNIQRRAQQEAPQ
Subjt:  MPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]1.5e-4487.39Show/hide
Query:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN
        M+NQNDEV+LREAQQGVIARMIS+MEALTDRL+R EIENRARERMPPPLA  ++INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQN
Subjt:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN

Query:  IQRRAQQEAPQ
        IQRRAQQEA Q
Subjt:  IQRRAQQEAPQ

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]3.3e-3179.12Show/hide
Query:  MEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVPQD
        MEALTDRL+RLEIENRARERMPPPLA  + INHN+NQ+EGDG D LDDDQVTLL EPRRVGHGVVR RG G+AYQNIQRR QQE PQ+ ++
Subjt:  MEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVPQD

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]3.1e-3486.81Show/hide
Query:  MISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ
        MIS+MEALTDRL+R EIENRARERMPPPLA  ++INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQNIQRRAQQEA Q
Subjt:  MISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]1.5e-1548.6Show/hide
Query:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ
        + R REA +G + RMI SMEALT+R+ RLE +N+A  R+PPP    V+   +++++EGDG D  +DDQ T+L  PR     VG G+ RGRGRGR Y N Q
Subjt:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ

Query:  RRAQQEA
        R  +  A
Subjt:  RRAQQEA

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein1.6e-2082.09Show/hide
Query:  MPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ
        MPPP A  +VINHNDNQ EGDG DGLDDDQVTLL E RR GH VVR +GRGRAYQNIQRRAQQEAPQ
Subjt:  MPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ

A0A5A7TK52 Retrotrans_gag domain-containing protein7.3e-4587.39Show/hide
Query:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN
        M+NQNDEV+LREAQQGVIARMIS+MEALTDRL+R EIENRARERMPPPLA  ++INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQN
Subjt:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN

Query:  IQRRAQQEAPQ
        IQRRAQQEA Q
Subjt:  IQRRAQQEAPQ

A0A5A7TYI0 Uncharacterized protein1.6e-3179.12Show/hide
Query:  MEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVPQD
        MEALTDRL+RLEIENRARERMPPPLA  + INHN+NQ+EGDG D LDDDQVTLL EPRRVGHGVVR RG G+AYQNIQRR QQE PQ+ ++
Subjt:  MEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVPQD

A0A5D3CHG3 Retrotrans_gag domain-containing protein1.5e-3486.81Show/hide
Query:  MISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ
        MIS+MEALTDRL+R EIENRARERMPPPLA  ++INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQNIQRRAQQEA Q
Subjt:  MISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQ

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241157.1e-1648.6Show/hide
Query:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ
        + R REA +G + RMI SMEALT+R+ RLE +N+A  R+PPP    V+   +++++EGDG D  +DDQ T+L  PR     VG G+ RGRGRGR Y N Q
Subjt:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ

Query:  RRAQQEA
        R  +  A
Subjt:  RRAQQEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTGACCTGCAACTCCCCTCTACCTTGTATCACTAGTTCTAACCGCTATTGCGGGCAATCTCTCGTGAGATGTCCTGGTTATACTCCTAGAGTAAAACGTCTCTG
GTCTTTACTTAGGAATTTACTAGCTGAAGAAACAGCTTGGCTCTACTCCACCTCTAGCCTCTTCTGTGTGAGGCTCTACTCAACCATCAAAGTTGTCTCAATTAACTGTG
AAAAGATGGACAATCAAAATGATGAAGTACGATTAAGAGAGGCACAACAAGGAGTTATTGCACGGATGATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTG
GAGATTGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTCTAGCACAATATGTGGTAATTAACCATAATGACAACCAACATGAGGGTGATGGTTTTGATGGTTTAGACGA
TGACCAAGTTACATTACTTGGGGAGCCAAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGAAG
CACCTCAGGTTCCCCAAGACTCTTGCTCTGATACCAAAATGTCACATCCCCCTCCCACACTCCCATCTTTAAGCCTAAGAAACGATGTGAAGCCAACAAGCACCGTTCTT
CACTTAATGATACTCACTGACTCTAACTTAGCTACCATCTCTAATACTAGAAGAACAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTGACCTGCAACTCCCCTCTACCTTGTATCACTAGTTCTAACCGCTATTGCGGGCAATCTCTCGTGAGATGTCCTGGTTATACTCCTAGAGTAAAACGTCTCTG
GTCTTTACTTAGGAATTTACTAGCTGAAGAAACAGCTTGGCTCTACTCCACCTCTAGCCTCTTCTGTGTGAGGCTCTACTCAACCATCAAAGTTGTCTCAATTAACTGTG
AAAAGATGGACAATCAAAATGATGAAGTACGATTAAGAGAGGCACAACAAGGAGTTATTGCACGGATGATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTG
GAGATTGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTCTAGCACAATATGTGGTAATTAACCATAATGACAACCAACATGAGGGTGATGGTTTTGATGGTTTAGACGA
TGACCAAGTTACATTACTTGGGGAGCCAAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGAAG
CACCTCAGGTTCCCCAAGACTCTTGCTCTGATACCAAAATGTCACATCCCCCTCCCACACTCCCATCTTTAAGCCTAAGAAACGATGTGAAGCCAACAAGCACCGTTCTT
CACTTAATGATACTCACTGACTCTAACTTAGCTACCATCTCTAATACTAGAAGAACAATTTAA
Protein sequenceShow/hide protein sequence
MVLTCNSPLPCITSSNRYCGQSLVRCPGYTPRVKRLWSLLRNLLAEETAWLYSTSSLFCVRLYSTIKVVSINCEKMDNQNDEVRLREAQQGVIARMISSMEALTDRLDRL
EIENRARERMPPPLAQYVVINHNDNQHEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQEAPQVPQDSCSDTKMSHPPPTLPSLSLRNDVKPTSTVL
HLMILTDSNLATISNTRRTI