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PI0023970 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023970
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionlight-regulated protein-like
Genome locationchr06:19136048..19141695
RNA-Seq ExpressionPI0023970
SyntenyPI0023970
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACV88397.1 GA-like protein, partial [Cucumis sativus]2.5e-6089.05Show/hide
Query:  VLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEE
        VLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAISVFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + EE
Subjt:  VLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEE

Query:  IDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF
        IDREYLDYADSKTVFPGEACD+LGGEFCEPEFLNGVF
Subjt:  IDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF

KAA0066931.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa]7.3e-6090.71Show/hide
Query:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L
        AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSRR AIKATASVVYD SVVDYSSAISVFPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA L
Subjt:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L

Query:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF
        EEIDREYLDY ADSKTVF GEACD+LGGEFCE EFLNGVF
Subjt:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF

KAE8650797.1 hypothetical protein Csa_017474 [Cucumis sativus]2.3e-6189.21Show/hide
Query:  QAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVAL
        QAVLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAISVFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + 
Subjt:  QAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVAL

Query:  EEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF
        EEIDREYLDYADSKTVFPGEACD+LGGEFCEPEFLNGVF
Subjt:  EEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF

XP_004145699.2 light-regulated protein, chloroplastic [Cucumis sativus]6.0e-6289.29Show/hide
Query:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVA
        MQAVLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAISVFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  +
Subjt:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVA

Query:  LEEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF
         EEIDREYLDYADSKTVFPGEACD+LGGEFCEPEFLNGVF
Subjt:  LEEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF

XP_038893926.1 light-regulated protein, chloroplastic-like [Benincasa hispida]3.3e-6088.49Show/hide
Query:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVAL
        MQAVLSIAVP LLP STLSNNNPS FPLI+F S+ SRR AIKATASVVYDAS+VDYSSAISVFPAEACETIGGEA CW NMFPEVR+QPSLNNQ PAVAL
Subjt:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVAL

Query:  EEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF
        EEIDREYLDYADS+TVFPGEACD+LGGEFCEPEFLN VF
Subjt:  EEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF

TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein2.9e-6289.29Show/hide
Query:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVA
        MQAVLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAISVFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  +
Subjt:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVA

Query:  LEEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF
         EEIDREYLDYADSKTVFPGEACD+LGGEFCEPEFLNGVF
Subjt:  LEEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF

A0A1S3BND3 light-regulated protein isoform X22.3e-5990Show/hide
Query:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L
        AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSR  AIKATASVVYD SVVDYSSAISVFPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA L
Subjt:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L

Query:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF
        EEIDREYLDY ADSKTVF GEACD+LGGEFCE EFLNGVF
Subjt:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF

A0A1S4DXW1 light-regulated protein isoform X32.3e-5990Show/hide
Query:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L
        AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSR  AIKATASVVYD SVVDYSSAISVFPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA L
Subjt:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L

Query:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF
        EEIDREYLDY ADSKTVF GEACD+LGGEFCE EFLNGVF
Subjt:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF

A0A5A7VMP8 Light-regulated protein isoform X23.6e-6090.71Show/hide
Query:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L
        AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSRR AIKATASVVYD SVVDYSSAISVFPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA L
Subjt:  AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-L

Query:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF
        EEIDREYLDY ADSKTVF GEACD+LGGEFCE EFLNGVF
Subjt:  EEIDREYLDY-ADSKTVFPGEACDELGGEFCEPEFLNGVF

C9E9F1 GA-like protein (Fragment)1.2e-6089.05Show/hide
Query:  VLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEE
        VLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAISVFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + EE
Subjt:  VLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEE

Query:  IDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF
        IDREYLDYADSKTVFPGEACD+LGGEFCEPEFLNGVF
Subjt:  IDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic9.1e-2154.08Show/hide
Query:  RRLAIK---ATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCE
        RR+A++   A A+V  +A+ VDYSS ISVFP EAC+ IGGEAC  + M+PE +L  S        A EE+DR+YL Y +  TVFP EACD+LGGEFC+
Subjt:  RRLAIK---ATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCE

Q96500 Light-regulated protein 1, chloroplastic1.5e-1843.57Show/hide
Query:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIK-----ATASVVYDASVVDYSSAI-SVFPAEACETIGGEACCWENMFPEVRLQPSLNNQ
        MQ  L I    LLP  + S ++P    L+   + +SR  +++     +++S+  D + VDY+S+I SVFPAEACE I G AC   +++PEV+L     ++
Subjt:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIK-----ATASVVYDASVVDYSSAI-SVFPAEACETIGGEACCWENMFPEVRLQPSLNNQ

Query:  NPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCEPEF
           VA E +DREY +Y   KTVF  EACD+LGGEFCEP+F
Subjt:  NPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCEPEF

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like1.0e-1943.57Show/hide
Query:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIK-----ATASVVYDASVVDYSSAI-SVFPAEACETIGGEACCWENMFPEVRLQPSLNNQ
        MQ  L I    LLP  + S ++P    L+   + +SR  +++     +++S+  D + VDY+S+I SVFPAEACE I G AC   +++PEV+L     ++
Subjt:  MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIK-----ATASVVYDASVVDYSSAI-SVFPAEACETIGGEACCWENMFPEVRLQPSLNNQ

Query:  NPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCEPEF
           VA E +DREY +Y   KTVF  EACD+LGGEFCEP+F
Subjt:  NPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCEPEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTCCCCAGCTCAACACTTTCCAATAATAACCCTTCTCATTTCCCTTTGATCACATTTGGTTCTAACTCATCACG
TCGCTTGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACGCATCTGTGGTCGATTATAGTTCTGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAGACAATAGGTGGAG
AGGCATGTTGTTGGGAAAATATGTTTCCAGAAGTAAGGCTTCAACCTTCACTTAACAATCAAAACCCCGCCGTTGCTTTGGAGGAGATTGATAGAGAATATCTTGATTAT
GCCGATTCAAAGACCGTTTTCCCAGGGGAGGCTTGCGATGAACTTGGTGGAGAATTCTGTGAACCTGAGTTCCTAAATGGCGTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
TGTTTTGATGCCAGAGCCAAGCAGTTGATCGACTTGATACTACACCTGATACTACACCGGTGTAAATGTTCTAACAATGTGTCTAGACCAGAGGAACAAGAAGGCCTGAA
CAAGATACCCATGCAAATACCCAACGTGTCTACCCTTAATACGGGTATGAGAATTTGGGAGTAGAACTGGCCTTCGATCTAATCCAAATTAACCCATTTCATTATATGTT
ATTTTCAGTGGGGACTGACAATTTGGCAGTGTACGTAACTTTATTGAGTTAGACATTATATAATGGGCCTTGGGCAAAAATATCTTGGAGAGATTCAAAATATCTCCAAG
ATGATGGGAAAGTTTGAAAGCTTCATGTAAATGAATAAACATCATAGGAAGAAGAAGCAAAGCAATCTTATCTAGAGAGACACCCTTCAGTACTGTATTCTATATAAAGA
GGTAATAGTAACTTACTTATACTCATTCAAATCTCAAAACCTTATTTACAACATATCATCAAAATCAAAATGCAGGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTCCC
CAGCTCAACACTTTCCAATAATAACCCTTCTCATTTCCCTTTGATCACATTTGGTTCTAACTCATCACGTCGCTTGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACG
CATCTGTGGTCGATTATAGTTCTGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTTGTTGGGAAAATATGTTTCCAGAAGTAAGGCTT
CAACCTTCACTTAACAATCAAAACCCCGCCGTTGCTTTGGAGGAGATTGATAGAGAATATCTTGATTATGCCGATTCAAAGACCGTTTTCCCAGGGGAGGCTTGCGATGA
ACTTGGTGGAGAATTCTGTGAACCTGAGTTCCTAAATGGCGTTTTCTAGTCTTTTTATTTTATTACAAAAAAGAAAAGAAAAGAAAAGAAAAGGTTCTTAGTTTAATTAG
CCCCCATATCGTTCTCTTCTGTAACTGTAACTGTAACTGTAACATCCTTTTCACCATTCTCAATAAATAATAACGCTTAAATATTTTAGCTTTTCATATATTTAAAAACA
GATTTCATTTCATAATACCAGTTAGACAGATTCTAATATTTGTACATCACTTCATAAACATTTTATACAAACTCATACATTCAAC
Protein sequenceShow/hide protein sequence
MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVALEEIDREYLDY
ADSKTVFPGEACDELGGEFCEPEFLNGVF