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PI0023989 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0023989
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr07:12774027..12774546
RNA-Seq ExpressionPI0023989
SyntenyPI0023989
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]6.4e-6375.64Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI
        SFQ EMKQQM+ LT AISK++GK KLPAQPD+ANVSAISLRSGKIL+TP+++EKK+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-6275.48Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKK
        SFQ EMKQQM+ LT AISK++GK KL AQ ++ANVSA+SLRSGKIL+TP+++EKK
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-6376.92Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI
        SFQ +MKQQM+ LT AISK++GK KLPAQPDHANVSAISLRSGKIL+TP+++EKK+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-6274.38Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLRWGND Q  +QA S+S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKIKMRK
        SFQ EMKQQM+ LT AISK++GK KLPAQPDHANVSAISLRSGKIL+TP+++EKK+  +K
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKIKMRK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.9e-6274.36Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI
        SFQ +MKQQM+ LT  ISK++GK KLPAQPDH NVSAISLRSGKIL+TP+++EKK+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032919.0e-6374.36Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI
        SFQ +MKQQM+ LT  ISK++GK KLPAQPDH NVSAISLRSGKIL+TP+++EKK+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI

A0A5D3CB46 Retrotransposon gag protein1.1e-6376.92Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI
        SFQ +MKQQM+ LT AISK++GK KLPAQPDHANVSAISLRSGKIL+TP+++EKK+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI

A0A5D3CFE7 Retrotransposon gag protein5.3e-6374.38Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP+++E+ N++R+YDPH NTYN GWRD PNLRWGND Q  +QA S+S+NQGTNLED++KAL TNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKIKMRK
        SFQ EMKQQM+ LT AISK++GK KLPAQPDHANVSAISLRSGKIL+TP+++EKK+  +K
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKIKMRK

A0A5D3CRR8 Retrotransposon gag protein2.0e-6275.48Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKK
        SFQ EMKQQM+ LT AISK++GK KL AQ ++ANVSA+SLRSGKIL+TP+++EKK
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKK

E5GBZ4 Retrotransposon gag protein3.1e-6375.64Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI
        SFQ EMKQQM+ LT AISK++GK KLPAQPD+ANVSAISLRSGKIL+TP+++EKK+
Subjt:  SFQNEMKQQMSHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGA
CTTAGTGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAATACTTACAACGCCGGTTGGAGAGACAATCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACTTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATG
TCTCATCTAACAAATGCCATAAGCAAACTAGAAGGTAAAGAAAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGA
AACTCCTTCAAGCGAAGAAAAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTATGCGGTCTAGTTGGACATCCTAATGACAAGTGCCCTGA
CTTAGTGGAAGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAATACTTACAACGCCGGTTGGAGAGACAATCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACTTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATG
TCTCATCTAACAAATGCCATAAGCAAACTAGAAGGTAAAGAAAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGA
AACTCCTTCAAGCGAAGAAAAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAG
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQM
SHLTNAISKLEGKEKLPAQPDHANVSAISLRSGKILETPSSEEKKIKMRKRKKN