CuGenDBv2

Gene ID	PI0024014
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	chr01:19082561..19082962
RNA-Seq Expression	PI0024014
Synteny	PI0024014
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR041373 - Reverse transcriptase, RNase H-like domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.3e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.3e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

TYK27058.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.3e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

TYK27963.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.3e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.3e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BBH7 Ty3/gypsy retrotransposon protein

1.1e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

A0A5D3DU86 Ty3/gypsy retrotransposon protein

1.1e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

A0A5D3DWA9 Ty3/gypsy retrotransposon protein

1.1e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

A0A5D3DZK6 Ty3/gypsy retrotransposon protein

1.1e-42

65.41

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

A0A5D3E325 Ty3/gypsy retrotransposon protein

1.1e-42

65.41

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Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE
        MAVVLSVQKWRHYL+GRRFT++SD+KALKFL+EQ+EVQPQ QKWLTKLLGYD EILYQP L N A DALSR++H +E K ++ +G+VD+ ++ KEV++DE
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDE

Query:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV
        ELQ LI+ LQ  P     Y  +N TL+YKGR+V
Subjt:  ELQKLIELLQREPGGRNVYEWSNDTLLYKGRLV

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

5.5e-07

37.5

Show/hide

Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRV
        +A+V + + +RHYL+GR F + SD + L +L   K+   +L +W  KL  +D +I Y     N   DALSR+
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRV

P20825 Retrovirus-related Pol polyprotein from transposon 297

4.2e-07

37.5

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Query:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRV
        +A+V + + +RHYL+GR+F + SD + L++L   KE   +L++W  +L  Y  +I Y     N+  DALSR+
Subjt:  MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCAGTGGTACTTTCAGTACAGAAGTGGAGGCATTACCTGATGGGAAGGAGGTTTACAGTGATCTCAGATAAAAAAGCTTTGAAGTTTTTGATGGAACAGAAAGAGGT
ACAACCACAGTTACAAAAATGGTTGACTAAGTTGCTGGGATACGATTTAGAGATTTTATATCAACCACGCCTCACCAACAATGCGGTGGATGCGTTGTCGAGGGTTAACC
ATCCGGTGGAATGTAAGATGATGACAGTCTCTGGAGTTGTGGACATAACATTGATTGCAAAAGAGGTTAAGGAAGACGAGGAGCTGCAGAAATTGATTGAACTACTACAG
AGAGAACCGGGTGGGAGAAATGTATATGAATGGAGTAATGACACCTTGTTATACAAAGGAAGGTTGGTATAA

mRNA sequence

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Protein sequence

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MAVVLSVQKWRHYLMGRRFTVISDKKALKFLMEQKEVQPQLQKWLTKLLGYDLEILYQPRLTNNAVDALSRVNHPVECKMMTVSGVVDITLIAKEVKEDEELQKLIELLQ
REPGGRNVYEWSNDTLLYKGRLV

PI0024014 (gene) of Melon (PI 482460) v1 genome