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PI0024029 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024029
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:11692889..11693923
RNA-Seq ExpressionPI0024029
SyntenyPI0024029
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]8.7e-4967.31Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++ +LE R+EE+SEKAD IDAV GR++GLPI++LL RVD LE  T     INYERG SSS    ++EER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRAMA+QAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-4866.67Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVE+EEQMLYL+E+PD++ +LE R+EE+SEK + IDAV GR++G PI++L+TRVD LE        +NYERG SS+  V +IEER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAPTGGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

KAA0060662.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-4966.03Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVE+EEQMLYL+E+PD++C+LE R+EE+SEK + IDAV G ++G PI++L+TRVD LE        +NYERG SS+  V +IEER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-4866.03Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++  +GKA  DRLVE+EEQMLYL+E+PD++ +LE R+EE+SEK + IDAV GR++G PI++L+TRVD LE        +NYERG SS+  V +IEER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

TYK04141.1 uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa]1.9e-4867.31Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++ +LE R++E+SEKA+ IDAV GR++GLPIK+LL RVD LE  T     INYERG SSS    ++EER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

TrEMBL top hitse value%identityAlignment
A0A5A7UIP7 Reverse transcriptase5.5e-4966.67Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVE+EEQMLYL+E+PD++ +LE R+EE+SEK + IDAV GR++G PI++L+TRVD LE        +NYERG SS+  V +IEER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAPTGGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

A0A5A7UXR6 Reverse transcriptase2.5e-4966.03Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVE+EEQMLYL+E+PD++C+LE R+EE+SEK + IDAV G ++G PI++L+TRVD LE        +NYERG SS+  V +IEER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

A0A5D3BQN3 Retrotrans_gag domain-containing protein4.2e-4967.31Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++ +LE R+EE+SEKAD IDAV GR++GLPI++LL RVD LE  T     INYERG SSS    ++EER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRAMA+QAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

A0A5D3BYE6 Reverse transcriptase7.2e-4966.03Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++  +GKA  DRLVE+EEQMLYL+E+PD++ +LE R+EE+SEK + IDAV GR++G PI++L+TRVD LE        +NYERG SS+  V +IEER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMINGMSEDFRA LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

A0A5D3CCE2 Retrotrans_gag domain-containing protein9.4e-4967.31Show/hide
Query:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI
        MS++   GKA  DRLVEIEEQMLYL+E+PD++ +LE R++E+SEKA+ IDAV GR++GLPIK+LL RVD LE  T     INYERG SSS    ++EER+
Subjt:  MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTT---RINYERGSSSSSPVGNIEERI

Query:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMINGMSEDFR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACAGCGAAAAAGATGGGCAAGGCCCACGCAGATCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGATGGAAATTCCGGACACCGTCTGCTTCTTGGAAGG
ACGGATCGAGGAAGTGTCCGAGAAAGCTGATGGTATTGATGCGGTGACCGGTCGCCTCGACGGTTTACCCATAAAGAAGTTGTTAACAAGAGTTGATACCTTAGAGGCAA
AGACTACAAGAATAAACTACGAACGTGGGAGCAGCTCGTCGAGCCCGGTTGGCAACATAGAGGAACGAATTGGCGAGCTAGATAGCTCCCAAAAATCGATTGTCGAGATG
ATAAACGGCATGTCAGAGGACTTTCGTGCCGCTCTTGATGTCGTCAGGAACGAGATCGCAGACGTGAGCGCGAGGGTGAATCTCACAATGCGAGCCATGGCGAACCAAGC
TCCAACTGGAGGAGCTATACAAGCCTTAAACCGTGGGCCAGGACCAAGTTGTATGAACATGGGGTCCAAGAACTCTCGTCGGCGTACGCAGCGGCAGAGCGACTGTTTGA
TCTGTCCCCTGACTCTCAAGATGAGAGTCGTCCTCCAAGTCCCTCACTTGGAAGAGATGAGGACGATTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACAGCGAAAAAGATGGGCAAGGCCCACGCAGATCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGATGGAAATTCCGGACACCGTCTGCTTCTTGGAAGG
ACGGATCGAGGAAGTGTCCGAGAAAGCTGATGGTATTGATGCGGTGACCGGTCGCCTCGACGGTTTACCCATAAAGAAGTTGTTAACAAGAGTTGATACCTTAGAGGCAA
AGACTACAAGAATAAACTACGAACGTGGGAGCAGCTCGTCGAGCCCGGTTGGCAACATAGAGGAACGAATTGGCGAGCTAGATAGCTCCCAAAAATCGATTGTCGAGATG
ATAAACGGCATGTCAGAGGACTTTCGTGCCGCTCTTGATGTCGTCAGGAACGAGATCGCAGACGTGAGCGCGAGGGTGAATCTCACAATGCGAGCCATGGCGAACCAAGC
TCCAACTGGAGGAGCTATACAAGCCTTAAACCGTGGGCCAGGACCAAGTTGTATGAACATGGGGTCCAAGAACTCTCGTCGGCGTACGCAGCGGCAGAGCGACTGTTTGA
TCTGTCCCCTGACTCTCAAGATGAGAGTCGTCCTCCAAGTCCCTCACTTGGAAGAGATGAGGACGATTGTGTAA
Protein sequenceShow/hide protein sequence
MSTAKKMGKAHADRLVEIEEQMLYLMEIPDTVCFLEGRIEEVSEKADGIDAVTGRLDGLPIKKLLTRVDTLEAKTTRINYERGSSSSSPVGNIEERIGELDSSQKSIVEM
INGMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQALNRGPGPSCMNMGSKNSRRRTQRQSDCLICPLTLKMRVVLQVPHLEEMRTIV