; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0024068 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024068
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:17055725..17057389
RNA-Seq ExpressionPI0024068
SyntenyPI0024068
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032753.1 hypothetical protein E6C27_scaffold853G00960 [Cucumis melo var. makuwa]4.0e-1438.95Show/hide
Query:  MASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPTPTYTTLVGKINLTLGKKERINKIKDDK
        MA N+ EW  D F+S QGGR    EG +KNVVVA +GQ+T    LL+SMA+SQV+A SSS Q                           + R+N I+D++
Subjt:  MASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPTPTYTTLVGKINLTLGKKERINKIKDDK

Query:  VVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSS----IENLLRECMQKKNVFLQNQVTSIRNLEV
        VVK+ + VKHL I +D   I H+I  Q  N +  P         +E L+ E MQ+ ++ LQ+Q T I NL++
Subjt:  VVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSS----IENLLRECMQKKNVFLQNQVTSIRNLEV

KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]2.0e-1335.83Show/hide
Query:  EATLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPT---PTYTTLVGKINLTLGKKE
        + TLD++ +N++E  +DD   +   R +   G ++NV+VAL+GQ+T MK LL+SMA+SQV+A  + +Q + ++ E  P      +TT    +N  +    
Subjt:  EATLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPT---PTYTTLVGKINLTLGKKE

Query:  RINKIKDDKVVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSSIENLLRECMQKKNVFLQNQVTSIRNLEVQLVQLGNYFS
        +     +                R      +S P  QQ TT TPSS SS+  LLR+ MQ+K+ F+Q+Q TSI NLE+ L QL   FS
Subjt:  RINKIKDDKVVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSSIENLLRECMQKKNVFLQNQVTSIRNLEVQLVQLGNYFS

KAA0066251.1 uncharacterized protein E6C27_scaffold21G002810 [Cucumis melo var. makuwa]1.2e-1364.06Show/hide
Query:  MIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGE
        MI N RQF  H  +DPHK+I SFYSI  SFHM GI  +ELRFALFP  + DEAKRW NSL+ G+
Subjt:  MIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGE

XP_038889341.1 uncharacterized protein LOC120079252 [Benincasa hispida]4.4e-1327.3Show/hide
Query:  MIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGEAT----------------------------------
        MI N  QF G Q EDPH H+ SF  +C +F + G+  E +R  LFP  LRDEAK+W  SLE  E T                                  
Subjt:  MIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGEAT----------------------------------

Query:  ---------------LDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVV-----VALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPTPTYT
                       LD ++ N ++W     + R GGR       E  +V       L  Q+ T+ ++L+SMAI+Q   AS S Q ++          + 
Subjt:  ---------------LDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVV-----VALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPTPTYT

Query:  TLVG-------------KINLTLGKKERINKIKDDKVVKVNLTVKHLVITRDTITIDH----SIPAQQQNTTTTPSSSSSIENLLRECMQKKNVFLQNQV
         ++G              +NL     E  ++++     +   T +     R+     +    S P  QQ ++++ +S  S+E LL++ M K N  +Q Q 
Subjt:  TLVG-------------KINLTLGKKERINKIKDDKVVKVNLTVKHLVITRDTITIDH----SIPAQQQNTTTTPSSSSSIENLLRECMQKKNVFLQNQV

Query:  TSIRNLEVQLVQLGN
        +SIRNLE+Q+ QL +
Subjt:  TSIRNLEVQLVQLGN

XP_038896560.1 uncharacterized protein LOC120084813 [Benincasa hispida]9.8e-1358.21Show/hide
Query:  MTQMIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGE
        M QMI N  +FGG Q EDPH H+ SF  IC++F + G+ PEELR  LFP  LRDEA+RW  SLE  E
Subjt:  MTQMIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGE

TrEMBL top hitse value%identityAlignment
A0A061EW79 Retrotrans_gag domain-containing protein1.7e-1031.45Show/hide
Query:  QMIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGEATLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKN
        QMI  V QFGG   +DP+ HI +F  IC +F  +G+  + +R  LFP  LRD+AK W+NSL         +AS+   WD+                 +  
Subjt:  QMIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGEATLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKN

Query:  VVVALRGQ-ITTMKNLLKSMAISQVNAASSSI--QKLSRMSETTPTPTYTTLVGKINLTLGKKERINKIKDDKVVKVNLTVKHLVITRDTITIDHSIPAQ
        VV AL  + I    +LL+ +  +     S  +  +K++ M E     T +T      LT   K      K DK + VN  V++  +T  + T   + P  
Subjt:  VVVALRGQ-ITTMKNLLKSMAISQVNAASSSI--QKLSRMSETTPTPTYTTLVGKINLTLGKKERINKIKDDKVVKVNLTVKHLVITRDTITIDHSIPAQ

Query:  QQNTTTTPSSSSSIENLLRECMQKKNVFLQNQVTSIRNLEVQLVQLGN
          +         S+E++  + M K N F+QNQ TSIRNLE+Q+ QL +
Subjt:  QQNTTTTPSSSSSIENLLRECMQKKNVFLQNQVTSIRNLEVQLVQLGN

A0A5A7SQQ9 Uncharacterized protein1.9e-1438.95Show/hide
Query:  MASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPTPTYTTLVGKINLTLGKKERINKIKDDK
        MA N+ EW  D F+S QGGR    EG +KNVVVA +GQ+T    LL+SMA+SQV+A SSS Q                           + R+N I+D++
Subjt:  MASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPTPTYTTLVGKINLTLGKKERINKIKDDK

Query:  VVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSS----IENLLRECMQKKNVFLQNQVTSIRNLEV
        VVK+ + VKHL I +D   I H+I  Q  N +  P         +E L+ E MQ+ ++ LQ+Q T I NL++
Subjt:  VVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSS----IENLLRECMQKKNVFLQNQVTSIRNLEV

A0A5D3BCV5 Uncharacterized protein5.6e-1464.06Show/hide
Query:  MIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGE
        MI N RQF  H  +DPHK+I SFYSI  SFHM GI  +ELRFALFP  + DEAKRW NSL+ G+
Subjt:  MIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGE

A0A5D3CSC7 Uncharacterized protein9.9e-1156.16Show/hide
Query:  TLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSE
        TLDS+A NNEEWD+D F+S +GGR K  EG ++NV+V  +GQ+T M NLL+ M   QVNAASSS Q + ++ E
Subjt:  TLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSE

A0A5D3D2S0 Uncharacterized protein9.6e-1435.83Show/hide
Query:  EATLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPT---PTYTTLVGKINLTLGKKE
        + TLD++ +N++E  +DD   +   R +   G ++NV+VAL+GQ+T MK LL+SMA+SQV+A  + +Q + ++ E  P      +TT    +N  +    
Subjt:  EATLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPT---PTYTTLVGKINLTLGKKE

Query:  RINKIKDDKVVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSSIENLLRECMQKKNVFLQNQVTSIRNLEVQLVQLGNYFS
        +     +                R      +S P  QQ TT TPSS SS+  LLR+ MQ+K+ F+Q+Q TSI NLE+ L QL   FS
Subjt:  RINKIKDDKVVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSSIENLLRECMQKKNVFLQNQVTSIRNLEVQLVQLGNYFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACAGATGATACCGAACGTCAGGCAGTTTGGCGGCCACCAACGAGAAGATCCACACAAGCACATTCGAAGCTTTTACTCCATTTGTGCATCATTTCACATGTCTGG
CATATTGCCAGAGGAGTTGCGTTTTGCCCTCTTCCCGTTAATGCTAAGGGATGAGGCAAAGAGATGGACAAACTCCTTAGAGGATGGGGAGGCTACGCTGGACTCTATGG
CCAGCAACAATGAAGAATGGGATGAAGATGATTTCAACTCTCGTCAAGGAGGAAGAGAAAAAAGACTGGAAGGATGGGAGAAGAACGTAGTGGTGGCTTTGCGAGGCCAA
ATAACTACGATGAAAAATCTTTTGAAATCGATGGCGATATCACAAGTTAACGCCGCGAGCAGCTCAATTCAGAAATTGTCGCGTATGTCAGAAACAACCCCTACTCCAAC
ATATACAACCTTGGTTGGAAAAATCAACCTGACTTTGGGTAAGAAGGAACGAATCAACAAAATCAAGGACGACAAGGTGGTCAAGGTGAACCTCACTGTGAAGCACCTGG
TGATCACCCGAGACACCATAACAATAGATCACAGTATCCCCGCCCAACAACAGAACACCACCACTACTCCATCCTCATCCTCATCAATAGAGAATCTCCTCCGCGAATGC
ATGCAGAAGAAAAATGTCTTTCTGCAAAACCAAGTCACATCCATTCGGAATCTGGAAGTACAGTTAGTGCAGCTAGGCAACTACTTCTCTGAAGACCAAGGGGATCCCTC
CCTAGTAATACTGAAACGTCAAACCAGCAGGGGGATTCGGAAAAGACCAATGTCACGCGGTGACATTGAGAAGCGAAAGAAATCTGACCATCGCAACATTAGGATGTCGA
TGCAGCAATACCAGCAGTTTAGAACTTTGATGGATCACCCCCACGCGGTTTTCGTGCAATACGTGCCTGCTCCGGTCATCCCACCCGACCTAAAGGAACCTCTAGCACCA
CCAATGCATACCAATCTTGGCACCCCTGATTCTCGCCAAGAAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGACACAGATGATACCGAACGTCAGGCAGTTTGGCGGCCACCAACGAGAAGATCCACACAAGCACATTCGAAGCTTTTACTCCATTTGTGCATCATTTCACATGTCTGG
CATATTGCCAGAGGAGTTGCGTTTTGCCCTCTTCCCGTTAATGCTAAGGGATGAGGCAAAGAGATGGACAAACTCCTTAGAGGATGGGGAGGCTACGCTGGACTCTATGG
CCAGCAACAATGAAGAATGGGATGAAGATGATTTCAACTCTCGTCAAGGAGGAAGAGAAAAAAGACTGGAAGGATGGGAGAAGAACGTAGTGGTGGCTTTGCGAGGCCAA
ATAACTACGATGAAAAATCTTTTGAAATCGATGGCGATATCACAAGTTAACGCCGCGAGCAGCTCAATTCAGAAATTGTCGCGTATGTCAGAAACAACCCCTACTCCAAC
ATATACAACCTTGGTTGGAAAAATCAACCTGACTTTGGGTAAGAAGGAACGAATCAACAAAATCAAGGACGACAAGGTGGTCAAGGTGAACCTCACTGTGAAGCACCTGG
TGATCACCCGAGACACCATAACAATAGATCACAGTATCCCCGCCCAACAACAGAACACCACCACTACTCCATCCTCATCCTCATCAATAGAGAATCTCCTCCGCGAATGC
ATGCAGAAGAAAAATGTCTTTCTGCAAAACCAAGTCACATCCATTCGGAATCTGGAAGTACAGTTAGTGCAGCTAGGCAACTACTTCTCTGAAGACCAAGGGGATCCCTC
CCTAGTAATACTGAAACGTCAAACCAGCAGGGGGATTCGGAAAAGACCAATGTCACGCGGTGACATTGAGAAGCGAAAGAAATCTGACCATCGCAACATTAGGATGTCGA
TGCAGCAATACCAGCAGTTTAGAACTTTGATGGATCACCCCCACGCGGTTTTCGTGCAATACGTGCCTGCTCCGGTCATCCCACCCGACCTAAAGGAACCTCTAGCACCA
CCAATGCATACCAATCTTGGCACCCCTGATTCTCGCCAAGAAACATAA
Protein sequenceShow/hide protein sequence
MTQMIPNVRQFGGHQREDPHKHIRSFYSICASFHMSGILPEELRFALFPLMLRDEAKRWTNSLEDGEATLDSMASNNEEWDEDDFNSRQGGREKRLEGWEKNVVVALRGQ
ITTMKNLLKSMAISQVNAASSSIQKLSRMSETTPTPTYTTLVGKINLTLGKKERINKIKDDKVVKVNLTVKHLVITRDTITIDHSIPAQQQNTTTTPSSSSSIENLLREC
MQKKNVFLQNQVTSIRNLEVQLVQLGNYFSEDQGDPSLVILKRQTSRGIRKRPMSRGDIEKRKKSDHRNIRMSMQQYQQFRTLMDHPHAVFVQYVPAPVIPPDLKEPLAP
PMHTNLGTPDSRQET