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PI0024091 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024091
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr05:9516434..9518264
RNA-Seq ExpressionPI0024091
SyntenyPI0024091
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032001.1 uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa]7.9e-1041.54Show/hide
Query:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR---------------------------------------------
        YS   S DR+     A GA  +KTPTEARE+ISRMAENSQ+FGNRASELD+SLT+                                             
Subjt:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR---------------------------------------------

Query:  ----KNEMKQQMSHLTNAISILEGKGKLPA
            + EMKQQM+ LT AIS ++GKGKL A
Subjt:  ----KNEMKQQMSHLTNAISILEGKGKLPA

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-1062.5Show/hide
Query:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK-NEMKQQMSHLTNAIS
        YS   S DR K    A GA ADKTP EARE+I RMAENSQNFGNRASELDNSLT++ +E+K QM ++T  ++
Subjt:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK-NEMKQQMSHLTNAIS

KAA0040931.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.1e-1149.09Show/hide
Query:  PARIMHHSSYSARKSSD------RLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK--------------NEMKQQMSHLTNAIS
        P R M H   + R   +      R      A GA ADKTPT A+E+IS MAENSQ+FGNRASELDNSLT++               E+KQQM+ L  AIS
Subjt:  PARIMHHSSYSARKSSD------RLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK--------------NEMKQQMSHLTNAIS

Query:  ILEGKGKLPA
         ++GKGKLPA
Subjt:  ILEGKGKLPA

KAA0046065.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-0941.94Show/hide
Query:  FKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR-------------------------------------------------------KN
        +  A GA ADKTP EARE+ISRMAENSQ+FGNRASELDNSLT+                                                       + 
Subjt:  FKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR-------------------------------------------------------KN

Query:  EMKQQMSHLTNAISILEGKGKLPA
        EMKQQM+ LT AIS ++GKGKLPA
Subjt:  EMKQQMSHLTNAISILEGKGKLPA

KAA0061336.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-1577.27Show/hide
Query:  ACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAISILEGKGKLPA
        A GA ADKTPT+ARE+I RM ENSQ+FGNRASELDNSLT+  EMKQQMS LT AIS + GKGKLPA
Subjt:  ACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAISILEGKGKLPA

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein1.0e-1062.5Show/hide
Query:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK-NEMKQQMSHLTNAIS
        YS   S DR K    A GA ADKTP EARE+I RMAENSQNFGNRASELDNSLT++ +E+K QM ++T  ++
Subjt:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK-NEMKQQMSHLTNAIS

A0A5A7TXC8 Retrotransposon gag protein5.0e-1041.94Show/hide
Query:  FKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR-------------------------------------------------------KN
        +  A GA ADKTP EARE+ISRMAENSQ+FGNRASELDNSLT+                                                       + 
Subjt:  FKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR-------------------------------------------------------KN

Query:  EMKQQMSHLTNAISILEGKGKLPA
        EMKQQM+ LT AIS ++GKGKLPA
Subjt:  EMKQQMSHLTNAISILEGKGKLPA

A0A5A7V4B8 Retrotransposon gag protein2.3e-1577.27Show/hide
Query:  ACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAISILEGKGKLPA
        A GA ADKTPT+ARE+I RM ENSQ+FGNRASELDNSLT+  EMKQQMS LT AIS + GKGKLPA
Subjt:  ACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAISILEGKGKLPA

A0A5D3CJL9 Transposon Ty3-I Gag-Pol polyprotein3.4e-1149.09Show/hide
Query:  PARIMHHSSYSARKSSD------RLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK--------------NEMKQQMSHLTNAIS
        P R M H   + R   +      R      A GA ADKTPT A+E+IS MAENSQ+FGNRASELDNSLT++               E+KQQM+ L  AIS
Subjt:  PARIMHHSSYSARKSSD------RLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK--------------NEMKQQMSHLTNAIS

Query:  ILEGKGKLPA
         ++GKGKLPA
Subjt:  ILEGKGKLPA

A0A5D3CZ23 Retrotrans_gag domain-containing protein3.8e-1041.54Show/hide
Query:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR---------------------------------------------
        YS   S DR+     A GA  +KTPTEARE+ISRMAENSQ+FGNRASELD+SLT+                                             
Subjt:  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR---------------------------------------------

Query:  ----KNEMKQQMSHLTNAISILEGKGKLPA
            + EMKQQM+ LT AIS ++GKGKL A
Subjt:  ----KNEMKQQMSHLTNAISILEGKGKLPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCGTAATACAAACATTTGTTCACCAACTCACCAAGTCAAGCTCACTTACTCGAAACGCATGAAGTCTGCAATCAGCTCGCGCAATCCAGCTCGCATAATGCATCA
TTCTTCTTACTCAGCTCGCAAATCTTCTGATCGCCTAAAAACGTTCAAGCAAGCATGTGGTGCATCGGCTGACAAAACCCCTACTGAGGCTAGAGAGATCATTTCAAGGA
TGGCTGAAAATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTGACCAGGAAGAATGAAATGAAGCAACAAATGTCTCATCTGACCAATGCAATAAGC
ATATTAGAAGGTAAAGGAAAACTTCCAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCGTAATACAAACATTTGTTCACCAACTCACCAAGTCAAGCTCACTTACTCGAAACGCATGAAGTCTGCAATCAGCTCGCGCAATCCAGCTCGCATAATGCATCA
TTCTTCTTACTCAGCTCGCAAATCTTCTGATCGCCTAAAAACGTTCAAGCAAGCATGTGGTGCATCGGCTGACAAAACCCCTACTGAGGCTAGAGAGATCATTTCAAGGA
TGGCTGAAAATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTGACCAGGAAGAATGAAATGAAGCAACAAATGTCTCATCTGACCAATGCAATAAGC
ATATTAGAAGGTAAAGGAAAACTTCCAGCTTAG
Protein sequenceShow/hide protein sequence
MSRNTNICSPTHQVKLTYSKRMKSAISSRNPARIMHHSSYSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAIS
ILEGKGKLPA