CuGenDBv2

Gene ID	PI0024104
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr04:11805594..11808326
RNA-Seq Expression	PI0024104
Synteny	PI0024104
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

4.6e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

6.0e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

4.6e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]

6.0e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

2.7e-39

58.64

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RWKWFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

2.2e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

A0A5A7TXW1 Retrotransposon protein

2.2e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

A0A5A7U476 Retrotransposon protein

1.3e-39

58.64

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RWKWFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

A0A5D3BDX0 Retrotransposon protein

2.9e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

A0A5D3BZB1 Retrotransposon protein

2.9e-39

58.02

Show/hide

Query:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF
        MD  E+A ++  F  SQ QLL+MLELL N+ + I H  Y+ RHRIRQLAYFRMIH SDL        D  CF+                  DV+EMVAMF
Subjt:  MDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDL--------DDFCFSF-----------------DVKEMVAMF

Query:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE
        LH+LA +VKNRVIQREF+RS ETISR+FN+VLLAV+RLH ELLKK QPV   CTD RW+WFE
Subjt:  LHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

3.0e-04

32.86

Show/hide

Query:  VKEMVAMFLHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRL---------HGELLKKTQPVTKAC
        ++  +A+FL ++  N++ R +Q  F  S ETISR+FN VL AV+ +         + + L+   P  K C
Subjt:  VKEMVAMFLHVLARNVKNRVIQREFVRSDETISRYFNIVLLAVLRL---------HGELLKKTQPVTKAC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCAGTTCCGTTATGGAAATGGTTATTAGTATTGATCTTGCAATGGACCCACGAGAAATTGCTAGACTCCTAACCGTGTTCACAACTTCTCAACATCAGTTACTAAT
GATGTTGGAGTTATTAATGAACAACCACAGGATGATACAACATACAGCATACGACGCTAGGCATAGAATTAGGCAGCTAGCGTACTTCCGCATGATCCATGAATCTGACC
TAGACGACTTCTGCTTTAGTTTCGATGTCAAGGAGATGGTCGCCATGTTCCTCCACGTACTCGCGCGCAACGTGAAGAACCGAGTGATCCAAAGGGAGTTCGTGCGATCG
GATGAGACAATTTCGCGATATTTCAACATAGTCTTGTTGGCAGTGCTACGCCTACATGGCGAGTTGTTGAAGAAAACTCAACCAGTAACGAAGGCATGCACGGATCCCAG
ATGGAAGTGGTTTGAGGTAGGTATGGCAAGTTTCTCCCGGGCCCCAAAACACATCTGGACGAAGGAGGAAGAGTCGTACCTGGTCGAGTCCTTGGTTAAGTTGGTATCCA
CTGGCAGCTGGAAGTTAGATAACGGTACCTTCCGTCCTGGGTACCTTGCTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSSSVMEMVISIDLAMDPREIARLLTVFTTSQHQLLMMLELLMNNHRMIQHTAYDARHRIRQLAYFRMIHESDLDDFCFSFDVKEMVAMFLHVLARNVKNRVIQREFVRS
DETISRYFNIVLLAVLRLHGELLKKTQPVTKACTDPRWKWFEVGMASFSRAPKHIWTKEEESYLVESLVKLVSTGSWKLDNGTFRPGYLA

PI0024104 (gene) of Melon (PI 482460) v1 genome