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PI0024125 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024125
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr10:5424680..5425637
RNA-Seq ExpressionPI0024125
SyntenyPI0024125
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045094.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.2e-9965.47Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----
        ME+G+IARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+KPT       KN  E     T  ETT ED KYIERLEDWDSKNHQIITW    
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----

Query:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL
                                                      LDQAKI+PDHIRLIKVLMGLRPEYESV AALLHRN LPSLDAAVQ+ILFE+KRL
Subjt:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL

Query:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH
        G+ SS+P D ALATTH R  NE +F KNCKL  HKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K  SSSVVAA TSSD T     QL 
Subjt:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH

Query:  DLHDLLK
        DLHDLLK
Subjt:  DLHDLLK

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.4e-10068.64Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------
        ME+ ++ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVKP            + ET+ ED++YIERLEDWDSKNHQIITW           
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------

Query:  --------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRLGISSSMPSDAALATTHSRPP
                                  LDQAKI+PDHIRLIKVLMGLRPEYESV AALLHRNPLPSLDAAVQ+ILFEEKRLGI SS+ SD ALATTH R  
Subjt:  --------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRLGISSSMPSDAALATTHSRPP

Query:  NEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLHDLHDLLK
        NE  F KNCKL GHKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K+ SSSVVAA TS  T PS + QL DLHDLLK
Subjt:  NEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLHDLHDLLK

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]6.1e-9761.44Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------
        ME+ ++ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVKP            + ET+ ED++YIERLEDWDSKNHQIITW           
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------

Query:  ----------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDA
                                                                  L+QAKI+PDHIRLIKVLMGLRPEYESV AALLHRNPLPSLDA
Subjt:  ----------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDA

Query:  AVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTS
        AVQ+ILFEEKRLGI SS+ SD ALATTH R  NE  F KNCKL GHKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K+ SSSVVAA TS
Subjt:  AVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTS

Query:  SDTTPSPIFQLHDLHDLLK
        SD T     QL DLHDLLK
Subjt:  SDTTPSPIFQLHDLHDLLK

XP_008450155.1 PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]2.2e-9965.47Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----
        ME+G+IARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+KPT       KN  E     T  ETT ED KYIERLEDWDSKNHQIITW    
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----

Query:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL
                                                      LDQAKI+PDHIRLIKVLMGLRPEYESV AALLHRN LPSLDAAVQ+ILFE+KRL
Subjt:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL

Query:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH
        G+ SS+P D ALATTH R  NE +F KNCKL  HKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K  SSSVVAA TSSD T     QL 
Subjt:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH

Query:  DLHDLLK
        DLHDLLK
Subjt:  DLHDLLK

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]4.5e-10061.85Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKP------TKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----
        ME+ E+ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVKP      T+N+D D  + T+QETT E  KYIERLEDWDSKNHQIITW     
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKP------TKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----

Query:  ----------------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNP
                                                                        LDQAKINP+HIRLIKVLMGLRPEYESV AALLHRNP
Subjt:  ----------------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNP

Query:  LPSLDAAVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSV
        LPSLDAA+Q+ILFEE RLGI SS+PSD ALATTHSR  NE  F KNCKL GHKF NCPTIECRYCHKRGHIL+NC TRPPRPPG  +KPKSS K SS  +
Subjt:  LPSLDAAVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSV

Query:  VAATTSSDTTPSPIFQLHDLHDLLK
        VAA T SD T    FQL+DLHDLLK
Subjt:  VAATTSSDTTPSPIFQLHDLHDLLK

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882002.9e-9761.44Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------
        ME+ ++ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVKP            + ET+ ED++YIERLEDWDSKNHQIITW           
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------

Query:  ----------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDA
                                                                  L+QAKI+PDHIRLIKVLMGLRPEYESV AALLHRNPLPSLDA
Subjt:  ----------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDA

Query:  AVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTS
        AVQ+ILFEEKRLGI SS+ SD ALATTH R  NE  F KNCKL GHKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K+ SSSVVAA TS
Subjt:  AVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTS

Query:  SDTTPSPIFQLHDLHDLLK
        SD T     QL DLHDLLK
Subjt:  SDTTPSPIFQLHDLHDLLK

A0A1S3BPL0 uncharacterized protein LOC1034918281.1e-9965.47Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----
        ME+G+IARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+KPT       KN  E     T  ETT ED KYIERLEDWDSKNHQIITW    
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----

Query:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL
                                                      LDQAKI+PDHIRLIKVLMGLRPEYESV AALLHRN LPSLDAAVQ+ILFE+KRL
Subjt:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL

Query:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH
        G+ SS+P D ALATTH R  NE +F KNCKL  HKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K  SSSVVAA TSSD T     QL 
Subjt:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH

Query:  DLHDLLK
        DLHDLLK
Subjt:  DLHDLLK

A0A5A7TPN5 Putative mitochondrial protein1.1e-9965.47Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----
        ME+G+IARPISTILDGSNYITWA+QMRSF IGRKLWRIVTGDITKP+KPT       KN  E     T  ETT ED KYIERLEDWDSKNHQIITW    
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPT-------KNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW----

Query:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL
                                                      LDQAKI+PDHIRLIKVLMGLRPEYESV AALLHRN LPSLDAAVQ+ILFE+KRL
Subjt:  ----------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRL

Query:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH
        G+ SS+P D ALATTH R  NE +F KNCKL  HKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K  SSSVVAA TSSD T     QL 
Subjt:  GISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLH

Query:  DLHDLLK
        DLHDLLK
Subjt:  DLHDLLK

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-10068.64Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------
        ME+ ++ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVKP            + ET+ ED++YIERLEDWDSKNHQIITW           
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------

Query:  --------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRLGISSSMPSDAALATTHSRPP
                                  LDQAKI+PDHIRLIKVLMGLRPEYESV AALLHRNPLPSLDAAVQ+ILFEEKRLGI SS+ SD ALATTH R  
Subjt:  --------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDAAVQKILFEEKRLGISSSMPSDAALATTHSRPP

Query:  NEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLHDLHDLLK
        NE  F KNCKL GHKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K+ SSSVVAA TS  T PS + QL DLHDLLK
Subjt:  NEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTSSDTTPSPIFQLHDLHDLLK

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-948.5e-9761.76Show/hide
Query:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------
        ME+ ++ARPISTILDG+NYITWAHQMRSF IGRKLWRIVTGDITKPVKP            + ET+ ED++YIERLEDWDSKNHQIITW           
Subjt:  MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITW-----------

Query:  ----------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDA
                                                                  LDQAKI+PDHIRLIKVLMGLRPEYESV AALLHRNPLPSLDA
Subjt:  ----------------------------------------------------------LDQAKINPDHIRLIKVLMGLRPEYESVWAALLHRNPLPSLDA

Query:  AVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTS
        AVQ+ILFEEKRLGI SS+ SD ALATTH R  NE  F KNCKL GHKF NCPTIECRYCHKRGHIL+NC TRPPRPPGHSHKPK S K+ SSSVVAA TS
Subjt:  AVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKSSSSSVVAATTS

Query:  SDTTPSPIFQLHDLHDLLK
          T PS + QL DLHDLLK
Subjt:  SDTTPSPIFQLHDLHDLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGGGTGAAATTGCTCGTCCTATTAGCACCATACTGGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGTTTTTTTATCGGTCGCAAATTATGGCG
TATAGTGACAGGCGATATCACCAAGCCTGTCAAACCCACTAAGAATGTTGATGAAGATCTCCCAAATACTACCATTCAGGAGACTACTACCGAAGACGTTAAGTACATTG
AAAGACTTGAGGACTGGGACAGCAAAAATCATCAAATTATCACATGGTTAGATCAGGCAAAAATCAATCCTGACCATATCCGTCTCATCAAAGTACTTATGGGACTCCGT
CCAGAGTATGAATCTGTTTGGGCTGCCCTTTTACACCGCAACCCTCTACCTTCACTTGACGCCGCCGTTCAGAAAATCTTATTTGAGGAGAAAAGACTTGGCATTAGCTC
CTCTATGCCCTCTGATGCTGCCCTCGCAACCACTCATTCACGACCTCCAAATGAGTTCACCTTCTACAAAAATTGTAAACTCCAGGGACATAAGTTTACTAATTGTCCTA
CCATTGAGTGCAGGTACTGTCACAAGCGAGGTCACATCTTGGAAAACTGTCTGACTCGTCCACCTCGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACTTAAATCG
AGTTCCTCATCTGTGGTTGCTGCTACCACATCATCTGACACTACGCCATCTCCAATTTTTCAGCTACATGATCTTCATGACTTACTGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGGGTGAAATTGCTCGTCCTATTAGCACCATACTGGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGTTTTTTTATCGGTCGCAAATTATGGCG
TATAGTGACAGGCGATATCACCAAGCCTGTCAAACCCACTAAGAATGTTGATGAAGATCTCCCAAATACTACCATTCAGGAGACTACTACCGAAGACGTTAAGTACATTG
AAAGACTTGAGGACTGGGACAGCAAAAATCATCAAATTATCACATGGTTAGATCAGGCAAAAATCAATCCTGACCATATCCGTCTCATCAAAGTACTTATGGGACTCCGT
CCAGAGTATGAATCTGTTTGGGCTGCCCTTTTACACCGCAACCCTCTACCTTCACTTGACGCCGCCGTTCAGAAAATCTTATTTGAGGAGAAAAGACTTGGCATTAGCTC
CTCTATGCCCTCTGATGCTGCCCTCGCAACCACTCATTCACGACCTCCAAATGAGTTCACCTTCTACAAAAATTGTAAACTCCAGGGACATAAGTTTACTAATTGTCCTA
CCATTGAGTGCAGGTACTGTCACAAGCGAGGTCACATCTTGGAAAACTGTCTGACTCGTCCACCTCGCCCTCCTGGTCACTCACACAAACCCAAGTCCTCACTTAAATCG
AGTTCCTCATCTGTGGTTGCTGCTACCACATCATCTGACACTACGCCATCTCCAATTTTTCAGCTACATGATCTTCATGACTTACTGAAATAG
Protein sequenceShow/hide protein sequence
MEEGEIARPISTILDGSNYITWAHQMRSFFIGRKLWRIVTGDITKPVKPTKNVDEDLPNTTIQETTTEDVKYIERLEDWDSKNHQIITWLDQAKINPDHIRLIKVLMGLR
PEYESVWAALLHRNPLPSLDAAVQKILFEEKRLGISSSMPSDAALATTHSRPPNEFTFYKNCKLQGHKFTNCPTIECRYCHKRGHILENCLTRPPRPPGHSHKPKSSLKS
SSSSVVAATTSSDTTPSPIFQLHDLHDLLK