CuGenDBv2

Gene ID	PI0024138
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	chr10:18022981..18023516
RNA-Seq Expression	PI0024138
Synteny	PI0024138
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

7.9e-63

82.68

Show/hide

Query:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTP LLPSKPT P          PSL              SGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVG GLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAIA VLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]

5.1e-62

80.9

Show/hide

Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPT        +P  SL+G              DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI G GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAI  VLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

5.1e-62

80.9

Show/hide

Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPT        +P  SL+G              DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI G GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAI  VLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.1e-62

80.9

Show/hide

Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPT        +P  SL+G              DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI G GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAI  VLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

8.4e-65

82.58

Show/hide

Query:  MAATMATMAILNAKCFTPNKTPLLPSKPTNP----------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNKTPLLPSKPT P           PSL              SGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKTPLLPSKPTNP----------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIVG GLGGLLASGLVGTPEAMAAEAS+D RGQLLLIVVAPAIA VLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

5.5e-62

81.56

Show/hide

Query:  MAATMATMAILNAKCFTP-NKTPLLPSKP-TNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTPLLPSKP T P          PSL              SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTPLLPSKP-TNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVG GLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAIA VL+NILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

3.8e-63

82.68

Show/hide

Query:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTP LLPSKPT P          PSL              SGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVG GLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAIA VLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

3.8e-63

82.68

Show/hide

Query:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTP LLPSKPT P          PSL              SGDAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTNP---------SPSL--------------SGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVIVG GLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAIA VLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

2.5e-62

80.9

Show/hide

Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPT        +P  SL+G              DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI G GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAI  VLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

2.5e-62

80.9

Show/hide

Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPT        +P  SL+G              DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPT--------NPSPSLSG--------------DAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI G GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAI  VLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGFGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

2.1e-34

50.79

Show/hide

Query:  MAATMATMAILNAKCFTPNKTP----------LLPSKPTNPSPSLS------------------GDAALAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +P             S PT P P++S                   + ALA QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNKTP----------LLPSKPTNPSPSLS------------------GDAALAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGFGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VG G+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+  VLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGFGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

2.9e-36

53.27

Show/hide

Query:  MAATMA-TMAILNAKCFT--PNKTPLLPSKPTN-----------------------PSPSLSG---------DAALAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T   NKT     KPT+                        +P+++G         D A A QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFT--PNKTPLLPSKPTN-----------------------PSPSLSG---------DAALAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGFGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA IVG GL GL  SG L+ TPEA AA       +D RG LLL+VV PAI  VL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIVGFGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.5e-35

50.79

Show/hide

Query:  MAATMATMAILNAKCFTPNKTP----------LLPSKPTNPSPSLS------------------GDAALAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +P             S PT P P++S                   + ALA QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNKTP----------LLPSKPTNPSPSLS------------------GDAALAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIVGFGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VG G+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+  VLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGFGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCAACAATGGCGACCATGGCTATCCTCAACGCCAAATGCTTCACCCCAAATAAAACCCCACTCCTCCCTTCAAAACCCACCAACCCATCTCCCTCCCTCTCCGG
AGACGCTGCTTTGGCTGCCCAACAGATCGCCGATCTAGCGGAAGGCGACAACCGGGGACTGGCTCTTTTGCTGCCGCTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACA
TTCTTCAGCCGGCGTTGAATCAGATTAATCGGATGCGTACGGAGAAGGCGGTGATTGTTGGGTTTGGTCTGGGTGGGTTGCTGGCGTCGGGTCTAGTGGGGACGCCGGAG
GCAATGGCGGCGGAGGCTTCGAACGACGCGCGAGGACAGTTGCTGTTGATTGTGGTGGCGCCGGCGATTGCTTTGGTTTTGTATAATATTTTACAGCCGGCGTTGAACCA
GCTGAATCGGATGAGATCGGAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAATMATMAILNAKCFTPNKTPLLPSKPTNPSPSLSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGFGLGGLLASGLVGTPE
AMAAEASNDARGQLLLIVVAPAIALVLYNILQPALNQLNRMRSE

PI0024138 (gene) of Melon (PI 482460) v1 genome