CuGenDBv2

Gene ID	PI0024158
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	classical arabinogalactan protein 25
Genome location	chr11:4461544..4462153
RNA-Seq Expression	PI0024158
Synteny	PI0024158
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039346 - Classical arabinogalactan protein 25/26

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-35

82.69

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGS A P SL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        P YS
Subjt:  PCYS

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]

1.8e-48

99.04

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGS APPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        PCYS
Subjt:  PCYS

XP_011656664.1 classical arabinogalactan protein 25 [Cucumis sativus]

1.8e-48

99.04

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGS APPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        PCYS
Subjt:  PCYS

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]

3.5e-36

83.65

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGS A P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        P YS
Subjt:  PCYS

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]

7.9e-36

82.69

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGS A P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        P YS
Subjt:  PCYS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBF8 Uncharacterized protein

8.7e-49

99.04

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGS APPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        PCYS
Subjt:  PCYS

A0A1S3C8K2 classical arabinogalactan protein 25

8.7e-49

99.04

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGS APPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        PCYS
Subjt:  PCYS

A0A5A7SSC0 Classical arabinogalactan protein 25

8.7e-49

99.04

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGS APPNSL
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        PCYS
Subjt:  PCYS

A0A6J1H4T0 classical arabinogalactan protein 25-like

9.4e-35

80.77

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYC+AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGS A P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        P YS
Subjt:  PCYS

A0A6J1KVY5 classical arabinogalactan protein 25-like

1.7e-36

83.65

Show/hide

Query:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL
        MASFWYC+AVIM FMASPLLALPS+PNPK S  FQELSP+IAPLLPSTG  IPSATG SIPTIPSNPSPPNPD+FEA GPDSSALSPFGLPGS A P  L
Subjt:  MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSL

Query:  PCYS
        P YS
Subjt:  PCYS

SwissProt top hits

e value

%identity

Alignment

Q6NN00 Classical arabinogalactan protein 25

7.7e-10

43.36

Show/hide

Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSSAPPNS
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P   S +PP S
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSSAPPNS

Query:  LPCYSIGFFFFSM
        LP  S G    S+
Subjt:  LPCYSIGFFFFSM

Arabidopsis top hits

e value

%identity

Alignment

AT5G18690.1 arabinogalactan protein 25

5.5e-11

43.36

Show/hide

Query:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSSAPPNS
        +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   TIPS+PSPP+PD  +   PD  A SPF  P   S +PP S
Subjt:  SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSSAPPNS

Query:  LPCYSIGFFFFSM
        LP  S G    S+
Subjt:  LPCYSIGFFFFSM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTTCAAGAACT
CTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCTTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCCCCAAATCCAGATG
ACTTCGAAGCTCTTGGCCCTGATTCCTCTGCTCTTTCACCATTTGGCCTCCCAGGTTCCTCTGCACCTCCTAATTCCTTGCCTTGCTATTCAATTGGCTTCTTCTTCTTC
TCAATGGCTTAG

mRNA sequence

Show/hide mRNA sequence

TTTCATCATCATTAGAATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCT
CGCCTTTTCAAGAACTCTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCTTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGC
CCCCCAAATCCAGATGACTTCGAAGCTCTTGGCCCTGATTCCTCTGCTCTTTCACCATTTGGCCTCCCAGGTTCCTCTGCACCTCCTAATTCCTTGCCTTGCTATTCAAT
TGGCTTCTTCTTCTTCTCAATGGCTTAGCACTACTTGCCTTCTCTGTGCACTTACATTGATTCTGGAAACATATTTCTGCATAAAGGAGTTCCAATTGTACTTGTACTTG
ATTCATCACATCCCAGAATGTTTCCCCCCTTTTTTTCTTCTTCTGTTAATTTCATTTTTCTGAGTATATGGAAAATGGTACTTTTAGTTTAGCTTCTTTCCGTTCATCCA
TTGCTGGGGAAATTCAGATCATATTTGTACTATAAAGCATATATAGAATAGCGTTTTTCA

Protein sequence

Show/hide protein sequence

MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSSAPPNSLPCYSIGFFFF
SMA

PI0024158 (gene) of Melon (PI 482460) v1 genome