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PI0024170 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024170
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionlamin-like protein
Genome locationchr02:3606884..3608405
RNA-Seq ExpressionPI0024170
SyntenyPI0024170
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0009055 - electron transfer activity (molecular function)
InterPro domainsIPR003245 - Phytocyanin domain
IPR008972 - Cupredoxin
IPR039391 - Phytocyanin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653485.1 hypothetical protein Csa_007188 [Cucumis sativus]9.1e-3978.95Show/hide
Query:  GMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        G+ V   ++ +   +VVGWLL GVEG+QPVLHNVGGGKYTWTTNINFTDWSIH+HFYVGDWLYFGFDKHIYNVLEVN TSYE+CN+KDFIFNIT+
Subjt:  GMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

XP_008451094.1 PREDICTED: lamin-like protein [Cucumis melo]2.1e-4389.69Show/hide
Query:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFGMA +VVI TV   VVVGWLLCGVEG+QPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVN TSYE+CNDKDFIFNIT+
Subjt:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

XP_022988228.1 lamin-like protein [Cucurbita maxima]1.3e-3777.78Show/hide
Query:  MFGMAVEVVIVTVATTVV--VGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFGM  EV  VT    VV   GWLL GV+GRQPVLH VGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDK IYNVL+VN TSY+SCN+ DF+FN+TR
Subjt:  MFGMAVEVVIVTVATTVV--VGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

XP_031736018.1 lamin-like protein [Cucumis sativus]2.2e-4083.51Show/hide
Query:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFGMA E +IV +   +VVGWLL GVEG+QPVLHNVGGGKYTWTTNINFTDWSIH+HFYVGDWLYFGFDKHIYNVLEVN TSYE+CN+KDFIFNIT+
Subjt:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

XP_038880463.1 lamin-like protein [Benincasa hispida]3.7e-4085.57Show/hide
Query:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFGMAVE V  TV    V GWLL G EGRQPVLH VGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVN TSYESCNDK FIFN+TR
Subjt:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

TrEMBL top hitse value%identityAlignment
A0A1S3BQT0 lamin-like protein1.0e-4389.69Show/hide
Query:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFGMA +VVI TV   VVVGWLLCGVEG+QPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVN TSYE+CNDKDFIFNIT+
Subjt:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

A0A5E4G3Q0 PREDICTED: lamin5.1e-2776.39Show/hide
Query:  VEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        VE RQPVLH VGGG++TW  NI+FT+WS HE+FY GDWLYFGFDKHIYNVLEVN TSY++C DKDFI+N+TR
Subjt:  VEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

A0A6J1DWA4 lamin-like protein1.4e-3777.32Show/hide
Query:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFG    +V+      V +GWLLCGVEGR P+LH VGGGKYTW  N+NFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVN TSYESCN+KDFIFNITR
Subjt:  MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

A0A6J1HAJ6 lamin-like protein8.3e-3876.77Show/hide
Query:  MFGMAVEVVIVTVATTVV--VGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFGM VE   VT    VV   GWLL GVEGR+PVLH VGGGKYTWTTN+NFTDWSIHEHFYVGDWLYFGFDK IYNVL+VN TSY+SCN+ DF+FN+TR
Subjt:  MFGMAVEVVIVTVATTVV--VGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

A0A6J1JLN0 lamin-like protein6.4e-3877.78Show/hide
Query:  MFGMAVEVVIVTVATTVV--VGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        MFGM  EV  VT    VV   GWLL GV+GRQPVLH VGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDK IYNVL+VN TSY+SCN+ DF+FN+TR
Subjt:  MFGMAVEVVIVTVATTVV--VGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

SwissProt top hitse value%identityAlignment
Q39131 Lamin-like protein5.8e-1245.24Show/hide
Query:  TTVVVGWLLCG-VEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        T VV+ +L+   + G     + VG  K+ W  NIN+T W+  +HFY+GDWLYF FD++ +N+LEVN T YE C     I N TR
Subjt:  TTVVVGWLLCG-VEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

Q9T076 Early nodulin-like protein 21.5e-0443.64Show/hide
Query:  GGKYTWTTN--INFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKD
        GG   W TN   N+  WS    F V D LYF + K   +VLEVN   Y++CN K+
Subjt:  GGKYTWTTN--INFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKD

Arabidopsis top hitse value%identityAlignment
AT2G27035.1 early nodulin-like protein 206.3e-2252.94Show/hide
Query:  VATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        V  TV++  ++  VE     LH VGGG+YTW +++NF+DW+ H+ FY GDWLYFGF++  +N+L+VN +SYE C D D+IFNITR
Subjt:  VATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

AT3G01070.1 early nodulin-like protein 163.5e-1250Show/hide
Query:  VGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        VG  K+ W  NIN+T W+  +HFY+ DWLYF ++++ YNV+EVN T+Y SCN  + I N +R
Subjt:  VGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

AT4G12880.1 early nodulin-like protein 192.3e-1151.67Show/hide
Query:  GGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        G K  W  NIN+T W+  +HFYVGDWLYF F +  +N+LEVN   YE C     I N TR
Subjt:  GGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR

AT4G27520.1 early nodulin-like protein 21.1e-0543.64Show/hide
Query:  GGKYTWTTN--INFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKD
        GG   W TN   N+  WS    F V D LYF + K   +VLEVN   Y++CN K+
Subjt:  GGKYTWTTN--INFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKD

AT5G15350.1 early nodulin-like protein 174.1e-1345.24Show/hide
Query:  TTVVVGWLLCG-VEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR
        T VV+ +L+   + G     + VG  K+ W  NIN+T W+  +HFY+GDWLYF FD++ +N+LEVN T YE C     I N TR
Subjt:  TTVVVGWLLCG-VEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGGATGGCAGTAGAGGTAGTGATCGTGACCGTGGCAACGACGGTGGTGGTTGGGTGGTTGTTATGTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAACGTTGG
AGGAGGGAAATATACCTGGACAACTAATATTAACTTCACTGATTGGTCCATTCATGAGCACTTTTATGTTGGTGATTGGCTTTATTTTGGATTCGATAAACATATCTACA
ACGTGTTAGAAGTGAACAACACGAGCTACGAGAGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGAGGAAGAGATGTGTTCAATCTAA
mRNA sequenceShow/hide mRNA sequence
GAAATGTTCGGGATGGCAGTAGAGGTAGTGATCGTGACCGTGGCAACGACGGTGGTGGTTGGGTGGTTGTTATGTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAACGT
TGGAGGAGGGAAATATACCTGGACAACTAATATTAACTTCACTGATTGGTCCATTCATGAGCACTTTTATGTTGGTGATTGGCTTTATTTTGGATTCGATAAACATATCT
ACAACGTGTTAGAAGTGAACAACACGAGCTACGAGAGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGAGGAAGAGATGTGTTCAATCTAACAGAAGCAAAGA
CATACTATTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAATACTCTCCTCCTCCCATTATAATTTCACCACCAAACTTACCC
AAAAATAATCCCAATCTTTCTCCATCTTTAAAACCATTATTAATACCTTTCTCCTTCTTGCTATTGCTCAATATTTCCTCCATGAGGCTAATCCCTTCTTTCTAAATTAG
GGTTTATTGATACATTTATTTATATGTTGAATAATTAGGGCTAAAATTAGGGGTTAGCTTTGCTTGGGTTTGAATCCTTTAACTTCATTATGATTCTAGTTTAAGTTTTG
TTAAAGGAATGATAAAATAAAATTTAAGTTAACTATAGTTAGTCATTAGGGTTAGGGTTAGTAGGTGGTTGAAAGTTTGAACTTTGACTTGTTTGAAATTTGTTTGTTAG
AAGAGAAGGTGAAATAAAAGTACTTTTTTACAATAA
Protein sequenceShow/hide protein sequence
MFGMAVEVVIVTVATTVVVGWLLCGVEGRQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNNTSYESCNDKDFIFNITREEEMCSI