CuGenDBv2

Gene ID	PI0024199
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr11:15425592..15425855
RNA-Seq Expression	PI0024199
Synteny	PI0024199
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032476.1 reverse transcriptase [Cucumis melo var. makuwa]

5.1e-35

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

KAA0060777.1 reverse transcriptase [Cucumis melo var. makuwa]

4.2e-37

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA  + RPLEFR GDQVL+KLRPEQ++FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKIHP++H+SNLKPCHQDPDD
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

KAA0064694.1 polyprotein [Cucumis melo var. makuwa]

5.1e-35

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

5.1e-35

84.88

Show/hide

Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

5.1e-35

84.88

Show/hide

Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V1R7 Reverse transcriptase

2.0e-37

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA  + RPLEFR GDQVL+KLRPEQ++FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKIHP++H+SNLKPCHQDPDD
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

A0A5A7VBR9 Polyprotein

2.5e-35

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

A0A5D3BRZ6 Reverse transcriptase

2.5e-35

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

A0A5D3C4R1 Reverse transcriptase

2.5e-35

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

A0A5D3DBE0 Reverse transcriptase

2.5e-35

84.88

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Query:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD
        MKKWA KK RPLEFR GDQVL+KLRPEQV+FRG KDQ LVRKYEGPVEVLKKVGNTSYRVALPTWMKI+P+IH+SNLKP HQD +D
Subjt:  MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAGTGGGCAGGTAAGAAATGTCGTCCCCTCGAGTTTCGAACGGGAGATCAAGTCCTCGTTAAACTGCGACCAGAGCAAGTCCAATTTCGAGGACATAAAGACCA
ACACCTCGTTAGGAAATACGAGGGACCTGTTGAAGTCCTCAAGAAGGTGGGAAACACATCCTACCGAGTGGCGTTACCCACGTGGATGAAAATACATCCAATAATTCACA
TGAGTAACTTAAAGCCCTGCCACCAAGACCCCGATGACACGTAA

mRNA sequence

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Protein sequence

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MKKWAGKKCRPLEFRTGDQVLVKLRPEQVQFRGHKDQHLVRKYEGPVEVLKKVGNTSYRVALPTWMKIHPIIHMSNLKPCHQDPDDT

PI0024199 (gene) of Melon (PI 482460) v1 genome