CuGenDBv2

Gene ID	PI0024206
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	classical arabinogalactan protein 4
Genome location	chr07:10237563..10238138
RNA-Seq Expression	PI0024206
Synteny	PI0024206
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8649311.1 hypothetical protein Csa_014808 [Cucumis sativus]

3.0e-72

92.61

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MASSTLLNL T+AFLLIS  ANSPAPSPAP+AESPTWKWTP+NEPPSSPP+AEPPMTTTSPPSPTISPP TPPELSPVP+SYAPTSPPMANPPTLSPTAP
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAI
        PPAVKSPSHAPSPAKTKAPAPAPSK SPAPAKAPKSSKAPVSSP SPNGQMEPPTPS+APAP KEGNGAGANRFAI
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAI

KAG7014869.1 hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.6e-50

70.16

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MAS  +LN+ T A LLISA ANSP PSPAPS ESP WKWTP  E PSSPP  EPP           SP  +PPELSPVPSS  PTSPP ANPPTLSP A 
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAVKSP HAPSP+KTKAPAPAPSK+SP PA+APKSS  PVSSP +PNG+MEPPTPS+AP   K  NG  ANRFAIGGS+A GLM AA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

XP_008462882.1 PREDICTED: classical arabinogalactan protein 4 [Cucumis melo]

1.5e-79

94.24

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MASSTLLNL T+AFLLISA ANSPAPSPAPSAESPTWKWTPTN+PPSSPP+AEPPMTTTSPPSPTISPPATPPELSPVPSSY+PTSPPMANPPTLSPTAP
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAV SPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSP SPNGQMEPPTPS APAP KEGNGAGANRFAIGGSIAAG MIAAFIA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

XP_011654351.1 classical arabinogalactan protein 4 [Cucumis sativus]

1.4e-77

92.67

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MASSTLLNL T+AFLLIS  ANSPAPSPAP+AESPTWKWTP+NEPPSSPP+AEPPMTTTSPPSPTISPP TPPELSPVP+SYAPTSPPMANPPTLSPTAP
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAVKSPSHAPSPAKTKAPAPAPSK SPAPAKAPKSSKAPVSSP SPNGQMEPPTPS+APAP KEGNGAGANRFAIGGSI AGLMIAAFIA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

XP_038877309.1 vegetative cell wall protein gp1-like [Benincasa hispida]

4.2e-66

82.2

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MASST+L + TVA LLISA ANSP PSPAP  ESP WKWTP+NEPPSSPP AEPPM TTSPPSPTISPPATPPE+SP+PSSYAPT PP ANPPTLSPTA 
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PP VKSPSHAPSPAKTKAPAPAPSK+SP+PAKAPKSSKAP SSP SPNG MEPP PS+APAP K+ NG  ANRFAIGGS+A GLMIAA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0Q7 Uncharacterized protein

6.8e-78

92.67

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MASSTLLNL T+AFLLIS  ANSPAPSPAP+AESPTWKWTP+NEPPSSPP+AEPPMTTTSPPSPTISPP TPPELSPVP+SYAPTSPPMANPPTLSPTAP
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAVKSPSHAPSPAKTKAPAPAPSK SPAPAKAPKSSKAPVSSP SPNGQMEPPTPS+APAP KEGNGAGANRFAIGGSI AGLMIAAFIA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

A0A1S3CHW9 classical arabinogalactan protein 4

7.3e-80

94.24

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MASSTLLNL T+AFLLISA ANSPAPSPAPSAESPTWKWTPTN+PPSSPP+AEPPMTTTSPPSPTISPPATPPELSPVPSSY+PTSPPMANPPTLSPTAP
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAV SPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSP SPNGQMEPPTPS APAP KEGNGAGANRFAIGGSIAAG MIAAFIA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

A0A5A7V3Q7 Classical arabinogalactan protein 4

7.3e-80

94.24

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MASSTLLNL T+AFLLISA ANSPAPSPAPSAESPTWKWTPTN+PPSSPP+AEPPMTTTSPPSPTISPPATPPELSPVPSSY+PTSPPMANPPTLSPTAP
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAV SPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSP SPNGQMEPPTPS APAP KEGNGAGANRFAIGGSIAAG MIAAFIA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

A0A6J1E3R0 extensin-like

3.0e-49

69.11

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MAS  +LN+ T A LLISA+ANSP PSPAPS ESP WKWTP  + PSSPP  EPP           SP  +PPELSPVPSS  PTSPP ANPPTLSP A 
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAVKSP HAPSP+KTKAPAPAPSK+S  PA+APKSS APVSSP +PNG+MEPPTPS+AP   K  NG  ANRFAIGG++A GLM AA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

A0A6J1JCM0 extensin-like

4.0e-46

67.54

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Query:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP
        MAS  +LN+ T A LLISA+ANSP PS APS ES  WKWTP  E PSSPP  EPP           SP  +PPELSPVPSS  PTSP  ANPPTLSP A 
Subjt:  MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA
        PPAVKSP HAPSP+KTKAPAPAPSK+SP PA+APKSS AP SSP +PNG+MEPPTPS+AP   K  NG  ANRFAI  S+A GLM AA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G14890.1 arabinogalactan protein 9

2.2e-04

38.6

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Query:  VAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPP---SAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAPPPAVKSPS
        +  +LI+        SP  +  +P    TPT  PP++ P   SA PP+TT+ PP  T  PPA PP   P  SS  P SPP A PP ++ + PPP    P 
Subjt:  VAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPP---SAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAPPPAVKSPS

Query:  HAPSPAKTKAPAPAPSKISPAPAKAPKS-----SKAPVSSPESPNGQME-PPTPSIAPAP----LKEGNGA
          P P  T  PAP  S  +  PA AP +     S +P SSP  P+     P T SI+PAP    + + NGA
Subjt:  HAPSPAKTKAPAPAPSKISPAPAKAPKS-----SKAPVSSPESPNGQME-PPTPSIAPAP----LKEGNGA

AT2G14890.2 arabinogalactan protein 9

2.9e-04

39.38

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Query:  VAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPP---SAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAPPPAVKSPS
        +  +LI+        SP  +  +P    TPT  PP++ P   SA PP+TT+ PP  T  PPA PP   P  SS  P SPP A PP ++ + PPP    P 
Subjt:  VAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPP---SAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAPPPAVKSPS

Query:  HAPSPAKTKAPAPAPSKISPAPAKAPKS-----SKAPVSSPESPNGQME-PPTPSIAPAP
          P P  T  PAP  S  +  PA AP +     S +P SSP  P+     P T SI+PAP
Subjt:  HAPSPAKTKAPAPAPSKISPAPAKAPKS-----SKAPVSSPESPNGQME-PPTPSIAPAP

Sequences

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CDS sequence

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ATGGCTTCCTCCACCCTTCTCAATCTTTTCACGGTGGCCTTCCTGCTTATCTCCGCCACTGCCAACTCCCCGGCACCGTCTCCAGCACCGAGCGCCGAATCACCAACGTG
GAAATGGACACCCACTAACGAACCACCGTCCTCTCCACCGTCCGCGGAACCGCCAATGACGACAACGTCTCCACCTTCGCCTACAATATCTCCCCCGGCCACCCCACCGG
AGCTCAGCCCCGTTCCATCATCCTATGCACCCACTTCGCCGCCCATGGCTAACCCGCCTACATTGTCGCCGACCGCTCCACCGCCGGCAGTGAAAAGTCCCAGTCATGCT
CCGTCGCCAGCGAAAACCAAAGCACCGGCTCCAGCTCCGTCGAAAATTAGTCCGGCGCCAGCAAAGGCACCGAAATCTTCTAAAGCTCCGGTGAGTAGTCCGGAGTCACC
GAATGGACAGATGGAGCCACCGACGCCATCCATAGCTCCGGCACCGTTGAAAGAGGGGAACGGCGCCGGTGCAAACAGATTCGCCATTGGTGGATCTATTGCAGCTGGAT
TAATGATTGCGGCTTTTATCGCTTAA

mRNA sequence

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Protein sequence

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MASSTLLNLFTVAFLLISATANSPAPSPAPSAESPTWKWTPTNEPPSSPPSAEPPMTTTSPPSPTISPPATPPELSPVPSSYAPTSPPMANPPTLSPTAPPPAVKSPSHA
PSPAKTKAPAPAPSKISPAPAKAPKSSKAPVSSPESPNGQMEPPTPSIAPAPLKEGNGAGANRFAIGGSIAAGLMIAAFIA

PI0024206 (gene) of Melon (PI 482460) v1 genome