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PI0024213 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024213
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr01:13691414..13691884
RNA-Seq ExpressionPI0024213
SyntenyPI0024213
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]7.7e-5876.28Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]7.7e-5876.28Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-5877.56Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD WTKAN+K  +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE N A+ DE+SQVS+IL+SLSKSFLQF SN  MNKIEY MTTLL ELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]7.7e-5876.28Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-5877.56Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD WTKAN+K  +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE N A+ DE+SQVS+IL+SLSKSFLQF SN  MNKIEY MTTLL ELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.7e-5876.28Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

A0A5A7TU93 Gag/pol protein3.7e-5876.28Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

A0A5A7VA67 Gag/pol protein9.8e-5977.56Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD WTKAN+K  +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE N A+ DE+SQVS+IL+SLSKSFLQF SN  MNKIEY MTTLL ELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

A0A5D3CPJ6 Gag/pol protein3.7e-5876.28Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        +EECP  P  NA++TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM EG SVREHVL+MMV F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE NGAVIDE SQVSFILESL +SFLQFRSNAVMNKI YT+TTLLNELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

A0A5D3D0D9 Gag/pol protein9.8e-5977.56Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD WTKAN+K  +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL
        NVAE N A+ DE+SQVS+IL+SLSKSFLQF SN  MNKIEY MTTLL ELQ F  L
Subjt:  NVAETNGAVIDEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATT
GACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCT
TAACGAGTTGCAGATTTTCAGTCTCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATT
GACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCT
TAACGAGTTGCAGATTTTCAGTCTCTTATGA
Protein sequenceShow/hide protein sequence
MEECPPSPIRNASQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVI
DEQSQVSFILESLSKSFLQFRSNAVMNKIEYTMTTLLNELQIFSLL