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PI0024238 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024238
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr02:8512559..8513456
RNA-Seq ExpressionPI0024238
SyntenyPI0024238
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]4.5e-2354.29Show/hide
Query:  SSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNT
        SSYNQI  TLD++  NN EWD+D F + RGGRG+++EG+D+N +V  Q QMTAMNNLL+ M   QVNA+  S  +  Q+D++GC+  G PH  DACP N 
Subjt:  SSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNT

Query:  ETVAF
        E VA+
Subjt:  ETVAF

KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]5.5e-2940Show/hide
Query:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACP
        ML+SSY QIK TLD + NN+ E  +DD   +   RGR+D GMD+N +VALQ Q+T M  LL+SM +SQV+A G  V A  Q+D+M  VGCG PH TDAC 
Subjt:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACP

Query:  FNTETVAF------------------------------------------------------------KNDALLQSQASLIFNREVQLGQLASDFSGRPQ
         N E  A+                                                            + DA +QSQ + I N E+ LGQLA DFSGRP 
Subjt:  FNTETVAF------------------------------------------------------------KNDALLQSQASLIFNREVQLGQLASDFSGRPQ

Query:  GSLSSNTEIPNQAGGSGKEK
        GSL SN E+PN   G  K K
Subjt:  GSLSSNTEIPNQAGGSGKEK

KAA0041246.1 uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa]3.8e-2252.52Show/hide
Query:  MNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKNDALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGS
        MN LL+S+ + QVN +G  + A  Q                            NDALLQSQAS I N E+QLGQL S+ S RP+GSL SNTE PNQ GGS
Subjt:  MNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKNDALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGS

Query:  GKEKCHAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIGNS
        GKEKC  VTLRS RNLTIR+   +R NSTS STTKIG++
Subjt:  GKEKCHAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIGNS

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]4.5e-3144.34Show/hide
Query:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNR------RGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPH
        ML+SSYNQIK  LDTM +N+ EW ++ FG+R      +G RGR ++G+D + +VALQ Q+  M N+L+SM + QVN    SV    Q+++MGCVGC  PH
Subjt:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNR------RGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPH

Query:  NTDACPFNTETVAF-KND------------ALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRDSDTKR
        NT+ACP NTE VA+ KND              + SQAS I N E+QLGQL SDFS RP+ S  SNTE PNQ         +          T ++   K 
Subjt:  NTDACPFNTETVAF-KND------------ALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRDSDTKR

Query:  SNSTSHSTTKIG
        SN  +    +IG
Subjt:  SNSTSHSTTKIG

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]6.4e-1761.45Show/hide
Query:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQID
        ML+SSYNQIK TLD+M NN+ EWD+  FG+R   RGR+ EG+DK+ VV LQ QM AMNNLL+SMT+SQVNA+   +HA  Q++
Subjt:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQID

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein3.1e-1761.45Show/hide
Query:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQID
        ML+SSYNQIK TLD+M NN+ EWD+  FG+R   RGR+ EG+DK+ VV LQ QM AMNNLL+SMT+SQVNA+   +HA  Q++
Subjt:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQID

A0A5A7TGS2 Uncharacterized protein1.9e-2252.52Show/hide
Query:  MNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKNDALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGS
        MN LL+S+ + QVN +G  + A  Q                            NDALLQSQAS I N E+QLGQL S+ S RP+GSL SNTE PNQ GGS
Subjt:  MNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKNDALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGS

Query:  GKEKCHAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIGNS
        GKEKC  VTLRS RNLTIR+   +R NSTS STTKIG++
Subjt:  GKEKCHAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIGNS

A0A5D3CC26 Uncharacterized protein2.2e-3144.34Show/hide
Query:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNR------RGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPH
        ML+SSYNQIK  LDTM +N+ EW ++ FG+R      +G RGR ++G+D + +VALQ Q+  M N+L+SM + QVN    SV    Q+++MGCVGC  PH
Subjt:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNR------RGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPH

Query:  NTDACPFNTETVAF-KND------------ALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRDSDTKR
        NT+ACP NTE VA+ KND              + SQAS I N E+QLGQL SDFS RP+ S  SNTE PNQ         +          T ++   K 
Subjt:  NTDACPFNTETVAF-KND------------ALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRDSDTKR

Query:  SNSTSHSTTKIG
        SN  +    +IG
Subjt:  SNSTSHSTTKIG

A0A5D3CSC7 Uncharacterized protein2.2e-2354.29Show/hide
Query:  SSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNT
        SSYNQI  TLD++  NN EWD+D F + RGGRG+++EG+D+N +V  Q QMTAMNNLL+ M   QVNA+  S  +  Q+D++GC+  G PH  DACP N 
Subjt:  SSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNT

Query:  ETVAF
        E VA+
Subjt:  ETVAF

A0A5D3D2S0 Uncharacterized protein2.7e-2940Show/hide
Query:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACP
        ML+SSY QIK TLD + NN+ E  +DD   +   RGR+D GMD+N +VALQ Q+T M  LL+SM +SQV+A G  V A  Q+D+M  VGCG PH TDAC 
Subjt:  MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACP

Query:  FNTETVAF------------------------------------------------------------KNDALLQSQASLIFNREVQLGQLASDFSGRPQ
         N E  A+                                                            + DA +QSQ + I N E+ LGQLA DFSGRP 
Subjt:  FNTETVAF------------------------------------------------------------KNDALLQSQASLIFNREVQLGQLASDFSGRPQ

Query:  GSLSSNTEIPNQAGGSGKEK
        GSL SN E+PN   G  K K
Subjt:  GSLSSNTEIPNQAGGSGKEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAAAGAGCTCCTACAACCAGATTAAGCTGACACTGGACACAATGGGCAACAATAATGGAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAG
AAGCGATGAAGGTATGGATAAGAACGCCGTGGTGGCGTTGCAGGAACAAATGACTGCGATGAACAATCTACTCAAATCTATGACAATATCGCAAGTCAATGCCTCAGGAG
GCTCTGTGCACGCGACAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGCCCATTCAACACTGAAACAGTCGCGTTCAAAAAT
GATGCCCTTCTGCAAAGTCAAGCTTCATTAATCTTCAATCGGGAGGTACAATTAGGGCAGCTAGCCAGTGATTTCTCCGGAAGACCACAGGGATCCCTCTCAAGTAATAC
AGAAATTCCAAATCAGGCGGGGGGATCTGGAAAAGAGAAGTGTCACGCGGTGACACTGCGCAGCGGAAGGAATTTGACCATCCGTGATTCTGACACTAAACGTAGCAACT
CCACTTCTCATTCTACTACCAAGATCGGCAACTCAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAAAGAGCTCCTACAACCAGATTAAGCTGACACTGGACACAATGGGCAACAATAATGGAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAG
AAGCGATGAAGGTATGGATAAGAACGCCGTGGTGGCGTTGCAGGAACAAATGACTGCGATGAACAATCTACTCAAATCTATGACAATATCGCAAGTCAATGCCTCAGGAG
GCTCTGTGCACGCGACAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGCCCATTCAACACTGAAACAGTCGCGTTCAAAAAT
GATGCCCTTCTGCAAAGTCAAGCTTCATTAATCTTCAATCGGGAGGTACAATTAGGGCAGCTAGCCAGTGATTTCTCCGGAAGACCACAGGGATCCCTCTCAAGTAATAC
AGAAATTCCAAATCAGGCGGGGGGATCTGGAAAAGAGAAGTGTCACGCGGTGACACTGCGCAGCGGAAGGAATTTGACCATCCGTGATTCTGACACTAAACGTAGCAACT
CCACTTCTCATTCTACTACCAAGATCGGCAACTCAAAATAA
Protein sequenceShow/hide protein sequence
MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKN
DALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIGNSK