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PI0024249 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024249
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:23684265..23685750
RNA-Seq ExpressionPI0024249
SyntenyPI0024249
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044843.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-2443.21Show/hide
Query:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGT------------------RPDH---------------SSELKAIVVWRNLQ
        G       D+G N   GY+ F  + V D + P MYS GL+MSPDD+M T                  RP H               + +L  I  W  LQ
Subjt:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGT------------------RPDH---------------SSELKAIVVWRNLQ

Query:  CQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN
        CQD   TR ++VRQL+ IPEL+  D+  LMRI+MRNV+DMKAFLEVPD +K  YC IIL+EN
Subjt:  CQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN

KAA0046050.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2555.28Show/hide
Query:  VDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDM
        VDVG NV  GYEGF  +D NDMEIP MYS+GLDMSP  I G R  H+        W N+QCQD   T  + VRQLQGI ELS  DK H + +LM NVNDM
Subjt:  VDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDM

Query:  KAFLEVPDELKLDYCMIILEENA
        KA L+V D++KLD   +I+++N+
Subjt:  KAFLEVPDELKLDYCMIILEENA

KAA0047509.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-2447.14Show/hide
Query:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDH-----------SSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS
        G       D+G N   GY+ F  + V D + P MYS GL+MSPDD+M TR              + +L  I  W  LQ QD   TR ++VRQL+ IPEL+
Subjt:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDH-----------SSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS

Query:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN
          D+  LMRI+MRNV+DMKAFLEVPD +   YC IIL+EN
Subjt:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN

KAA0052090.1 retrotransposon protein [Cucumis melo var. makuwa]9.3e-2751.43Show/hide
Query:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE-----------LKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS
        G      VDVG N   GY+ F  +   DM+ P MYSQGL+MSPDD+MG R    SE           L  I  W  LQ QD   TR KVVRQL+ IPEL+
Subjt:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE-----------LKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS

Query:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN
           +  LMR+LMRNVNDMK FL+VPD +K  YC IIL+EN
Subjt:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-3052.9Show/hide
Query:  DVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE---------------------------------LKAIVVWRNLQCQDERVTR
        DVG N   GYEGF  +D NDMEIPMMYSQG+DM  DDIMGTRPD S+E                                 LKAIV W N+Q QD     
Subjt:  DVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE---------------------------------LKAIVVWRNLQCQDERVTR

Query:  AKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEENA
         +VVRQLQ IPELS  D+V  M+ILM NV+DMKAFL++ DELKLDYC II ++NA
Subjt:  AKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEENA

TrEMBL top hitse value%identityAlignment
A0A5A7TMW5 Retrotransposon protein9.4e-2543.21Show/hide
Query:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGT------------------RPDH---------------SSELKAIVVWRNLQ
        G       D+G N   GY+ F  + V D + P MYS GL+MSPDD+M T                  RP H               + +L  I  W  LQ
Subjt:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGT------------------RPDH---------------SSELKAIVVWRNLQ

Query:  CQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN
        CQD   TR ++VRQL+ IPEL+  D+  LMRI+MRNV+DMKAFLEVPD +K  YC IIL+EN
Subjt:  CQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN

A0A5A7TSD1 Retrotransposon protein6.5e-2655.28Show/hide
Query:  VDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDM
        VDVG NV  GYEGF  +D NDMEIP MYS+GLDMSP  I G R  H+        W N+QCQD   T  + VRQLQGI ELS  DK H + +LM NVNDM
Subjt:  VDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDM

Query:  KAFLEVPDELKLDYCMIILEENA
        KA L+V D++KLD   +I+++N+
Subjt:  KAFLEVPDELKLDYCMIILEENA

A0A5A7U216 Retrotransposon protein1.2e-2447.14Show/hide
Query:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDH-----------SSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS
        G       D+G N   GY+ F  + V D + P MYS GL+MSPDD+M TR              + +L  I  W  LQ QD   TR ++VRQL+ IPEL+
Subjt:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDH-----------SSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS

Query:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN
          D+  LMRI+MRNV+DMKAFLEVPD +   YC IIL+EN
Subjt:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN

A0A5A7V469 Retrotransposon protein6.7e-3152.9Show/hide
Query:  DVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE---------------------------------LKAIVVWRNLQCQDERVTR
        DVG N   GYEGF  +D NDMEIPMMYSQG+DM  DDIMGTRPD S+E                                 LKAIV W N+Q QD     
Subjt:  DVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE---------------------------------LKAIVVWRNLQCQDERVTR

Query:  AKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEENA
         +VVRQLQ IPELS  D+V  M+ILM NV+DMKAFL++ DELKLDYC II ++NA
Subjt:  AKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEENA

A0A5D3BPL3 Retrotransposon protein4.5e-2751.43Show/hide
Query:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE-----------LKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS
        G      VDVG N   GY+ F  +   DM+ P MYSQGL+MSPDD+MG R    SE           L  I  W  LQ QD   TR KVVRQL+ IPEL+
Subjt:  GSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPMMYSQGLDMSPDDIMGTRPDHSSE-----------LKAIVVWRNLQCQDERVTRAKVVRQLQGIPELS

Query:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN
           +  LMR+LMRNVNDMK FL+VPD +K  YC IIL+EN
Subjt:  TRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGATGTTTTGTCATCCTATGCTACCTACTTAGGACCACTTTTGGATTAGCGTCGACGAAAATCGTTGATGTCAAGAAGATGGTTGCCATGCTTCATCACAT
ACTGGCGCACAACGTGAAGAATCGAGTGATCCAAAGGGAGTTCGTGCGGTCTGGGCCTCCTAAACAAGCTCTTTTCCCATTACGACGACTTGTGCTACGTATTTGGGAAA
AATGGTGCGATGGGAGCACGCACGGAGACATTGTCGATGTGGGATTGAATGTGTGTGGAGGGTACGAGGGATTTTTCACTAACGATGTGAATGATATGGAGATCCCTATG
ATGTACAGTCAGGGACTAGACATGTCGCCTGACGACATCATGGGCACACGACCCGATCACTCGAGTGAGTTGAAGGCCATTGTAGTGTGGCGAAATTTACAATGTCAAGA
TGAGCGCGTTACTCGTGCAAAAGTCGTTAGACAGCTGCAGGGGATCCCTGAACTGAGTACACGCGACAAGGTGCACCTTATGCGGATATTGATGCGCAATGTGAACGACA
TGAAAGCATTCTTGGAGGTACCCGATGAGCTTAAGTTGGACTACTGCATGATCATTCTCGAAGAGAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGATGTTTTGTCATCCTATGCTACCTACTTAGGACCACTTTTGGATTAGCGTCGACGAAAATCGTTGATGTCAAGAAGATGGTTGCCATGCTTCATCACAT
ACTGGCGCACAACGTGAAGAATCGAGTGATCCAAAGGGAGTTCGTGCGGTCTGGGCCTCCTAAACAAGCTCTTTTCCCATTACGACGACTTGTGCTACGTATTTGGGAAA
AATGGTGCGATGGGAGCACGCACGGAGACATTGTCGATGTGGGATTGAATGTGTGTGGAGGGTACGAGGGATTTTTCACTAACGATGTGAATGATATGGAGATCCCTATG
ATGTACAGTCAGGGACTAGACATGTCGCCTGACGACATCATGGGCACACGACCCGATCACTCGAGTGAGTTGAAGGCCATTGTAGTGTGGCGAAATTTACAATGTCAAGA
TGAGCGCGTTACTCGTGCAAAAGTCGTTAGACAGCTGCAGGGGATCCCTGAACTGAGTACACGCGACAAGGTGCACCTTATGCGGATATTGATGCGCAATGTGAACGACA
TGAAAGCATTCTTGGAGGTACCCGATGAGCTTAAGTTGGACTACTGCATGATCATTCTCGAAGAGAACGCTTGA
Protein sequenceShow/hide protein sequence
MEKRCFVILCYLLRTTFGLASTKIVDVKKMVAMLHHILAHNVKNRVIQREFVRSGPPKQALFPLRRLVLRIWEKWCDGSTHGDIVDVGLNVCGGYEGFFTNDVNDMEIPM
MYSQGLDMSPDDIMGTRPDHSSELKAIVVWRNLQCQDERVTRAKVVRQLQGIPELSTRDKVHLMRILMRNVNDMKAFLEVPDELKLDYCMIILEENA