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PI0024276 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024276
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:19711967..19712335
RNA-Seq ExpressionPI0024276
SyntenyPI0024276
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.4e-2465.17Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFD
        M+SF IGRKLW IVT DIT+PVK T  + N SK  TE+++  + ++ + E T+ED++YIERLEDWDSKNHQIITWL NTSI AIHTQFD
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFD

KAA0053979.1 Integrase, catalytic core [Cucumis melo var. makuwa]3.8e-2061.11Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA
        M+SF IGRKLWHIVT DIT+PVK    V +  +   E++     ++   +TT ED+KYIERLEDWD KNHQIITWL NTSI  IHTQFDA
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA

TYK14220.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]8.5e-2061.45Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISA
        M+SF IGRKLW IVT DIT+PVK+T  V N  K  TE+++  + ++ + ETT ED+KYIERLEDWDSKNHQIITWL+  S+ A
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISA

XP_016901896.1 PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]4.1e-2265.56Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA
        M+SF IGRKLW IVT DIT+P+K TT + NI      +D      V I ETT ED+KYIERLEDWDSKNHQIITWL NTSI AIHTQ D+
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]9.7e-2470Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA
        M+SF IGRKLW IVT DIT+PVK T L+     + TEN +T   +VT+QETT E  KYIERLEDWDSKNHQIITWL NTSI AIHTQFDA
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA

TrEMBL top hitse value%identityAlignment
A0A1S4E0Y9 uncharacterized protein LOC1079914632.0e-2265.56Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA
        M+SF IGRKLW IVT DIT+P+K TT + NI      +D      V I ETT ED+KYIERLEDWDSKNHQIITWL NTSI AIHTQ D+
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA

A0A5A7TXR0 Putative mitochondrial protein3.6e-2465.17Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFD
        M+SF IGRKLW IVT DIT+PVK T  + N SK  TE+++  + ++ + E T+ED++YIERLEDWDSKNHQIITWL NTSI AIHTQFD
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFD

A0A5A7UKE6 Integrase, catalytic core1.9e-2061.11Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA
        M+SF IGRKLWHIVT DIT+PVK    V +  +   E++     ++   +TT ED+KYIERLEDWD KNHQIITWL NTSI  IHTQFDA
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDA

A0A5A7VJS5 Zinc finger, CCHC-type4.1e-2061.45Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISA
        M+SF IGRKLW IVT DIT+PVK+T  V N  K  TE+++  + ++ + ETT ED+KYIERLEDWDSKNHQIITWL+  S+ A
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISA

A0A5D3CS33 Zinc finger, CCHC-type4.1e-2061.45Show/hide
Query:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISA
        M+SF IGRKLW IVT DIT+PVK+T  V N  K  TE+++  + ++ + ETT ED+KYIERLEDWDSKNHQIITWL+  S+ A
Subjt:  MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGTTTTTTTATTGGTCGAAAGTTATGGCATATTGTTACTAGAGATATCACTCGACCTGTTAAAAACACTACTCTAGTGACGAACATCAGTAAGGAGATCACTGA
GAATGATGAGACAAAATCAGTAGAAGTTACTATTCAAGAGACTACTCTAGAGGATGTCAAATATATTGAACGTCTTGAGGACTGGGATAGCAAAAATCATCAAATCATCA
CTTGGTTGGATAACACTTCTATTTCAGCTATTCATACTCAATTTGATGCATTGATACTGCAAAGGAACTTTGGGATTTTATGTCTACTCGCTTCTAGTCCATTGGTCTTG
CTCACTATTATCAAATACATTCTCGACTTATTAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGTTTTTTTATTGGTCGAAAGTTATGGCATATTGTTACTAGAGATATCACTCGACCTGTTAAAAACACTACTCTAGTGACGAACATCAGTAAGGAGATCACTGA
GAATGATGAGACAAAATCAGTAGAAGTTACTATTCAAGAGACTACTCTAGAGGATGTCAAATATATTGAACGTCTTGAGGACTGGGATAGCAAAAATCATCAAATCATCA
CTTGGTTGGATAACACTTCTATTTCAGCTATTCATACTCAATTTGATGCATTGATACTGCAAAGGAACTTTGGGATTTTATGTCTACTCGCTTCTAGTCCATTGGTCTTG
CTCACTATTATCAAATACATTCTCGACTTATTAGTCTAA
Protein sequenceShow/hide protein sequence
MQSFFIGRKLWHIVTRDITRPVKNTTLVTNISKEITENDETKSVEVTIQETTLEDVKYIERLEDWDSKNHQIITWLDNTSISAIHTQFDALILQRNFGILCLLASSPLVL
LTIIKYILDLLV