; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0024296 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024296
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTHO complex subunit 4D
Genome locationchr06:14851062..14851806
RNA-Seq ExpressionPI0024296
SyntenyPI0024296
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01611.1 THO complex subunit 4D [Cucumis melo var. makuwa]3.3e-16100Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

XP_004145851.1 THO complex subunit 4D [Cucumis sativus]3.3e-16100Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

XP_008457020.1 PREDICTED: THO complex subunit 4D [Cucumis melo]3.3e-16100Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

XP_022143379.1 THO complex subunit 4D-like [Momordica charantia]9.7e-1697.87Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE+LGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

XP_038896761.1 THO complex subunit 4D-like [Benincasa hispida]7.4e-1697.87Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDG+PMKIEMLGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

TrEMBL top hitse value%identityAlignment
A0A0A0L717 RRM domain-containing protein1.6e-16100Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

A0A1S3C452 THO complex subunit 4D1.6e-16100Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

A0A5D3BPA9 THO complex subunit 4D1.6e-16100Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

A0A6J1CP51 THO complex subunit 4D-like4.7e-1697.87Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE+LGDNAEMPVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

A0A6J1J564 THO complex subunit 4D-like1.8e-1595.74Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI
        GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PVSARI
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARI

SwissProt top hitse value%identityAlignment
Q58EA2 THO complex subunit 4-A8.9e-0443.9Show/hide
Query:  MGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE
        +G+A+V + R++DA  A+K+YN V LDG+PM I+++    E
Subjt:  MGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE

Q6NQ72 THO complex subunit 4D2.0e-1167.35Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI
        G+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P+S R+
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI

Q8L719 THO complex subunit 4B2.0e-0866.67Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMP
        G+AEVV++RR DA AA+KRYNNV LDGK MKIE++G N   P
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMP

Q8L773 THO complex subunit 4A1.2e-0867.5Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE
        G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N +
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE

Q94EH8 THO complex subunit 4C2.6e-1168.75Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI
        GSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-1268.75Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI
        GSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-1268.75Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI
        GSAEVVY RRSDA  A+++YNNVLLDG+PMK+E+LG N E  PV+AR+
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE-MPVSARI

AT5G37720.1 ALWAYS EARLY 41.4e-1267.35Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI
        G+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P+S R+
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI

AT5G37720.2 ALWAYS EARLY 41.4e-1267.35Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI
        G+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E P+S R+
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AEMPVSARI

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.5e-1067.5Show/hide
Query:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE
        G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N +
Subjt:  GSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACAAAGCCCTCTAACAACCCTTGTGCACGAAAATAAGCTAAAACAAGCTTATCGCGGCAAAAGAGAAGAAATACAAATCGAGGGTAAAATGGGCTCAGCAGAGGT
GGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGACGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGC
CGGTTTCTGCACGTATAATGTTACTGGAACGAATGGAAGAAACAGGAGGACAGTTGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACAAAGCCCTCTAACAACCCTTGTGCACGAAAATAAGCTAAAACAAGCTTATCGCGGCAAAAGAGAAGAAATACAAATCGAGGGTAAAATGGGCTCAGCAGAGGT
GGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGACGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGC
CGGTTTCTGCACGTATAATGTTACTGGAACGAATGGAAGAAACAGGAGGACAGTTGTTCTAA
Protein sequenceShow/hide protein sequence
MTQSPLTTLVHENKLKQAYRGKREEIQIEGKMGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARIMLLERMEETGGQLF