; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0024317 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024317
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:24061025..24061482
RNA-Seq ExpressionPI0024317
SyntenyPI0024317
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025858.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-4066.93Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRGL+CSGFGWNDE KCI+A K+L+DNW++SHPAAKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN+ +FP +YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-4064.29Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVPRGYDGFLAYDGNDMEFPTMYSQGLDM
        MRG +CSGFGWNDE KCI+A K+++D+W++SHPAAKGL NK FP YD+L Y+F +  ATGGRAE+F DVGSN P GYD F A   +D +F  MYS+GL+M
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVPRGYDGFLAYDGNDMEFPTMYSQGLDM

Query:  SPDDKMGTRPDRLSEGRASSSGSKKK
        SPD+ MGTR  R+SEGR  SSGSK+K
Subjt:  SPDDKMGTRPDRLSEGRASSSGSKKK

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-3966.14Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRGL+CSGFGWNDE KCI+A K+L+DNW++SHP AKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN+ +FP +YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-3966.93Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRG +CSGFGWNDE KCIIA K+L+DNW++SHPAAKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN+ +FP +YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

KAA0067987.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-3966.93Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRG +CSGFGWNDE KCIIA K L+DNW++SHPAAKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN  +FP++YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

TrEMBL top hitse value%identityAlignment
A0A5A7SI64 Retrotransposon protein1.7e-4066.93Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRGL+CSGFGWNDE KCI+A K+L+DNW++SHPAAKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN+ +FP +YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

A0A5A7TZA5 Retrotransposon protein9.8e-4164.29Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVPRGYDGFLAYDGNDMEFPTMYSQGLDM
        MRG +CSGFGWNDE KCI+A K+++D+W++SHPAAKGL NK FP YD+L Y+F +  ATGGRAE+F DVGSN P GYD F A   +D +F  MYS+GL+M
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVPRGYDGFLAYDGNDMEFPTMYSQGLDM

Query:  SPDDKMGTRPDRLSEGRASSSGSKKK
        SPD+ MGTR  R+SEGR  SSGSK+K
Subjt:  SPDDKMGTRPDRLSEGRASSSGSKKK

A0A5A7U308 Retrotransposon protein8.3e-4066.14Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRGL+CSGFGWNDE KCI+A K+L+DNW++SHP AKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN+ +FP +YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

A0A5A7VES2 Retrotransposon protein1.1e-3966.93Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRG +CSGFGWNDE KCIIA K+L+DNW++SHPAAKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN+ +FP +YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

A0A5A7VL88 Retrotransposon protein1.1e-3966.93Show/hide
Query:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD
        MRG +CSGFGWNDE KCIIA K L+DNW++SHPAAKGL NKPFP YD+L Y+FGR  ATG  AETF DVGSN P  GYD F   DGN  +FP++YSQG+D
Subjt:  MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVP-RGYDGFLAYDGNDMEFPTMYSQGLD

Query:  MSPDDKMGTRPDRLSEGRASSSGSKKK
        +S DD   +RP R SEGR  SSGSK+K
Subjt:  MSPDDKMGTRPDRLSEGRASSSGSKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein1.7e-0533.33Show/hide
Query:  LSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATG
        L   GF W+   + +I +  L+  ++K+HP A+  + KP   + DLC I+G   A G
Subjt:  LSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATG

AT2G24960.2 unknown protein1.8e-0733.33Show/hide
Query:  LSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATG
        L  +GF W+     +IA+ D+++ ++++HP A+  + K  P Y +LC+IFG+  + G
Subjt:  LSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATG

AT4G02210.1 unknown protein5.9e-0632.65Show/hide
Query:  GFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRG
        GF W+D  + ++A+  ++D ++K HP ++  + K  P Y DLC ++  G
Subjt:  GFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRG

AT4G02210.2 unknown protein5.9e-0632.65Show/hide
Query:  GFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRG
        GF W+D  + ++A+  ++D ++K HP ++  + K  P Y DLC ++  G
Subjt:  GFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRG

AT5G27260.1 unknown protein4.1e-0740.35Show/hide
Query:  SGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRA
        SGFGW+   K   A+ +++ +++K+HP  K L+   F  +D+L  IFG G ATG  A
Subjt:  SGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCTATCATGCAGTGGGTTCGGTTGGAACGATGAACTCAAATGCATCATTGCCAATAAAGACTTGTATGACAATTGGATGAAGAGTCATCCAGCCGCGAAGGG
TCTCCAAAACAAACCATTTCCCCGTTACGACGACCTATGCTACATCTTTGGAAGAGGTTGTGCAACAGGAGGTCGCGCTGAAACCTTTTTCGATGTTGGGTCGAACGTGC
CTAGAGGGTATGATGGATTCCTCGCTTATGACGGGAATGATATGGAGTTCCCCACGATGTACAGTCAAGGACTGGACATGTCACCTGACGACAAAATGGGCACACGACCC
GATCGGTTGTCTGAGGGTAGGGCTAGTTCGAGCGGTTCGAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCTATCATGCAGTGGGTTCGGTTGGAACGATGAACTCAAATGCATCATTGCCAATAAAGACTTGTATGACAATTGGATGAAGAGTCATCCAGCCGCGAAGGG
TCTCCAAAACAAACCATTTCCCCGTTACGACGACCTATGCTACATCTTTGGAAGAGGTTGTGCAACAGGAGGTCGCGCTGAAACCTTTTTCGATGTTGGGTCGAACGTGC
CTAGAGGGTATGATGGATTCCTCGCTTATGACGGGAATGATATGGAGTTCCCCACGATGTACAGTCAAGGACTGGACATGTCACCTGACGACAAAATGGGCACACGACCC
GATCGGTTGTCTGAGGGTAGGGCTAGTTCGAGCGGTTCGAAGAAGAAATAG
Protein sequenceShow/hide protein sequence
MRGLSCSGFGWNDELKCIIANKDLYDNWMKSHPAAKGLQNKPFPRYDDLCYIFGRGCATGGRAETFFDVGSNVPRGYDGFLAYDGNDMEFPTMYSQGLDMSPDDKMGTRP
DRLSEGRASSSGSKKK