; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0024325 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024325
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr01:10895612..10896217
RNA-Seq ExpressionPI0024325
SyntenyPI0024325
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0032259 - methylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsIPR000048 - IQ motif, EF-hand binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056746.1 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [Cucumis melo var. makuwa]5.3e-5182.07Show/hide
Query:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR
        P  G   EQE+VEE  TLS RTSTV LLA EDSLGDLHEKF RVMDTLETLTR MD L A ARIEANVNNNR  ND NRGGRRARRNFR LPNQR+DQRR
Subjt:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR

Query:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI
        RPMEN LRYADD+SMEEYEA +NGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI

KAA0057344.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]1.2e-6677.84Show/hide
Query:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ
        MA RRGGIPA GDNREQEEVE   TLS RTSTVRLLAV+D LGDLHEKF R+MD LETLT+ MDGLPA ARIEAN+N +RN++NRGGRRA+RNF  +PNQ
Subjt:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ

Query:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL
        RNDQ RRPME  LRYADDDS+E+ +AW+N QE DSSSGDE+GNIW+DNGDI+MR+ YRGHEARREVHHDYKMK+DL
Subjt:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL

TYK11204.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-7787.5Show/hide
Query:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ
        MAGRR GIPATGDNREQEEVEEN  LS RTSTV  LAVEDSLGDLHEKF RVMDTLETLTR MDGLPALARIEAN NN+RND NRGGRRARRNFR LPNQ
Subjt:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ

Query:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL
        RNDQR+RPMEN LRYAD+DSMEEYEAW+NGQECDSSS DEQGNIWNDN D++MR+VYRGHEA+REVHHDYKMKIDL
Subjt:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL

TYK11219.1 DExH-box ATP-dependent RNA helicase DExH7 [Cucumis melo var. makuwa]6.5e-4976Show/hide
Query:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ
        M  RRGGIPA GDNREQEEVEE  TLS RTSTV LLAVEDSLGDLH KF RVMD+LETLTR MDGLPA ARIEA   N+R D+NRGGRRARRNFR LP+Q
Subjt:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ

Query:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGD
        RNDQRRR ++N LRY +DDS E YEAW++ Q+ DSS GDEQ NIWNDNG+
Subjt:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGD

TYK21018.1 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [Cucumis melo var. makuwa]5.3e-5182.07Show/hide
Query:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR
        P  G   EQE+VEE  TLS RTSTV LLA EDSLGDLHEKF RVMDTLETLTR MD L A ARIEANVNNNR  ND NRGGRRARRNFR LPNQR+DQRR
Subjt:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR

Query:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI
        RPMEN LRYADD+SMEEYEA +NGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI

TrEMBL top hitse value%identityAlignment
A0A5A7UQ86 RNA-directed DNA polymerase-like protein5.7e-6777.84Show/hide
Query:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ
        MA RRGGIPA GDNREQEEVE   TLS RTSTVRLLAV+D LGDLHEKF R+MD LETLT+ MDGLPA ARIEAN+N +RN++NRGGRRA+RNF  +PNQ
Subjt:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ

Query:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL
        RNDQ RRPME  LRYADDDS+E+ +AW+N QE DSSSGDE+GNIW+DNGDI+MR+ YRGHEARREVHHDYKMK+DL
Subjt:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL

A0A5A7UR03 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase2.6e-5182.07Show/hide
Query:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR
        P  G   EQE+VEE  TLS RTSTV LLA EDSLGDLHEKF RVMDTLETLTR MD L A ARIEANVNNNR  ND NRGGRRARRNFR LPNQR+DQRR
Subjt:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR

Query:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI
        RPMEN LRYADD+SMEEYEA +NGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI

A0A5D3CJ99 Reverse transcriptase1.2e-7787.5Show/hide
Query:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ
        MAGRR GIPATGDNREQEEVEEN  LS RTSTV  LAVEDSLGDLHEKF RVMDTLETLTR MDGLPALARIEAN NN+RND NRGGRRARRNFR LPNQ
Subjt:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ

Query:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL
        RNDQR+RPMEN LRYAD+DSMEEYEAW+NGQECDSSS DEQGNIWNDN D++MR+VYRGHEA+REVHHDYKMKIDL
Subjt:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDL

A0A5D3CLX2 DExH-box ATP-dependent RNA helicase DExH73.1e-4976Show/hide
Query:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ
        M  RRGGIPA GDNREQEEVEE  TLS RTSTV LLAVEDSLGDLH KF RVMD+LETLTR MDGLPA ARIEA   N+R D+NRGGRRARRNFR LP+Q
Subjt:  MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQ

Query:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGD
        RNDQRRR ++N LRY +DDS E YEAW++ Q+ DSS GDEQ NIWNDNG+
Subjt:  RNDQRRRPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGD

A0A5D3DBZ2 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase2.6e-5182.07Show/hide
Query:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR
        P  G   EQE+VEE  TLS RTSTV LLA EDSLGDLHEKF RVMDTLETLTR MD L A ARIEANVNNNR  ND NRGGRRARRNFR LPNQR+DQRR
Subjt:  PATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNR--NDKNRGGRRARRNFRILPNQRNDQRR

Query:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI
        RPMEN LRYADD+SMEEYEA +NGQECDSSS DEQGNIWNDNGDI
Subjt:  RPMENLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTCGAAGAGGAGGAATCCCTGCCACGGGAGACAATCGTGAGCAAGAAGAGGTGGAAGAGAACATCACCCTCTCTCTGAGGACATCCACGGTGCGCTTGCTAGC
CGTCGAAGACTCCCTGGGAGATTTACACGAAAAGTTTGTTAGAGTAATGGATACTTTGGAGACACTGACTCGAATGATGGACGGACTACCGGCTCTGGCAAGAATTGAAG
CCAATGTAAATAATAACCGGAACGACAAAAACAGAGGAGGCCGACGAGCTCGAAGGAATTTTAGAATTTTGCCCAATCAAAGGAATGATCAAAGAAGGAGGCCAATGGAG
AATCTGTTGCGATATGCCGACGATGATTCAATGGAAGAATATGAAGCTTGGAAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGGAAATATTTGGAATGA
TAATGGAGATATTCGAATGAGACGAGTTTATAGAGGACATGAAGCACGAAGGGAAGTTCATCATGATTATAAGATGAAAATTGATCTCCAACCTATGATGGTAAGCGTGA
TATTGAATCTTTTTTGGATTGGATTAAAAATACTGAAAATTTCTTCAATTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTCGAAGAGGAGGAATCCCTGCCACGGGAGACAATCGTGAGCAAGAAGAGGTGGAAGAGAACATCACCCTCTCTCTGAGGACATCCACGGTGCGCTTGCTAGC
CGTCGAAGACTCCCTGGGAGATTTACACGAAAAGTTTGTTAGAGTAATGGATACTTTGGAGACACTGACTCGAATGATGGACGGACTACCGGCTCTGGCAAGAATTGAAG
CCAATGTAAATAATAACCGGAACGACAAAAACAGAGGAGGCCGACGAGCTCGAAGGAATTTTAGAATTTTGCCCAATCAAAGGAATGATCAAAGAAGGAGGCCAATGGAG
AATCTGTTGCGATATGCCGACGATGATTCAATGGAAGAATATGAAGCTTGGAAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGGAAATATTTGGAATGA
TAATGGAGATATTCGAATGAGACGAGTTTATAGAGGACATGAAGCACGAAGGGAAGTTCATCATGATTATAAGATGAAAATTGATCTCCAACCTATGATGGTAAGCGTGA
TATTGAATCTTTTTTGGATTGGATTAAAAATACTGAAAATTTCTTCAATTATATAA
Protein sequenceShow/hide protein sequence
MAGRRGGIPATGDNREQEEVEENITLSLRTSTVRLLAVEDSLGDLHEKFVRVMDTLETLTRMMDGLPALARIEANVNNNRNDKNRGGRRARRNFRILPNQRNDQRRRPME
NLLRYADDDSMEEYEAWKNGQECDSSSGDEQGNIWNDNGDIRMRRVYRGHEARREVHHDYKMKIDLQPMMVSVILNLFWIGLKILKISSII