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PI0024358 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024358
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:22184680..22185991
RNA-Seq ExpressionPI0024358
SyntenyPI0024358
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-1166.67Show/hide
Query:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Subjt:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
KAA0056553.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-1056Show/hide
Query:  MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        MA   +S G  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+ HGNTY
Subjt:  MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
KAA0058350.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-1169.23Show/hide
Query:  VKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Subjt:  VKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1064.29Show/hide
Query:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        G  +KV KCGVCGL+GHPNDKCP+++++ N++R+YD HGNTY
Subjt:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-1166.67Show/hide
Query:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Subjt:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
TrEMBL top hitse value%identityAlignment
A0A5A7V1C6 Retrotransposon gag protein8.2e-1164.29Show/hide
Query:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        G  +KV KCGVCGL+GHPNDKCP+++++ N++R+YD HGNTY
Subjt:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
A0A5D3BX36 Retrotransposon gag protein6.3e-1156Show/hide
Query:  MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        MA   +S G  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+ HGNTY
Subjt:  MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
A0A5D3CRR8 Retrotransposon gag protein3.7e-1166.67Show/hide
Query:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Subjt:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
A0A5D3D815 Retrotransposon gag protein4.8e-1166.67Show/hide
Query:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Subjt:  GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
A0A5D3DFM6 Retrotransposon gag protein4.8e-1169.23Show/hide
Query:  VKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
        +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Subjt:  VKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGAGGAGCGACGGTGGAAATGTGAAAGTTGTAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGAAAGAGGC
AAATGTCATTAGGAAGTACGATTCTCATGGAAACACTTACAAGCCGGTTGGAGAGACAACCCTAACCTTAAATGGGGAAATGACACCCAACGACCCGAAAACAGACCATC
GAAAGGCTTCCAAATGGTTATTTTTCAGCACTGCACAGCAACCAAGGCGAAAAAAATTCGGCACATCTGGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGAGGAGCGACGGTGGAAATGTGAAAGTTGTAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGAAAGAGGC
AAATGTCATTAGGAAGTACGATTCTCATGGAAACACTTACAAGCCGGTTGGAGAGACAACCCTAACCTTAAATGGGGAAATGACACCCAACGACCCGAAAACAGACCATC
GAAAGGCTTCCAAATGGTTATTTTTCAGCACTGCACAGCAACCAAGGCGAAAAAAATTCGGCACATCTGGAGGTTGA
Protein sequenceShow/hide protein sequence
MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTYKPVGETTLTLNGEMTPNDPKTDHRKASKWLFFSTAQQPRRKKFGTSGG