; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0024368 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024368
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:13076797..13077292
RNA-Seq ExpressionPI0024368
SyntenyPI0024368
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-4972.31Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        M +KL  TNIQG   +DCRVKSLKK   +   MRGPSCSGFGWNE++QCIIA+ DLFDNWVKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFAD
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        VGSNV N FND VPL D +D+DI  MYSQG
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG

KAA0062588.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-4262.31Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        MAEKLPG  ++  + IDCR+K+LK+T+QAIAEMRGP+CSGFGWN+E +CI+A+ +LFDNWV+SHP VKGLL+K FPYYD+L+YVFGRD+A    AETFAD
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        VGSN P    D   + D  ++D  ++YSQG
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]6.2e-4380.81Show/hide
Query:  EMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        EMRGPSCSGFGWNEE+QCIIA+ DLFD+WVKSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF DVGSNVPN FND++PL D HD+DI TMYSQG
Subjt:  EMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQG

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-4871.21Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        M +KL  TNIQG   +DCRVKSLKK   +   +RGPSCSGFGWNE++QCIIA+ DLFDNWVKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFAD
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQGWI
        VGSNV N FND VPL D +D+DI  MYSQG I
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQGWI

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.8e-5780Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        MAEKLPGTNIQ  STIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIA+ DLFD+W+KSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF +
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        VGSNV N FND++PL D HD+DI TMYSQG
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.8e-5780Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        MAEKLPGTNIQ  STIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIA+ DLFD+W+KSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF +
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        VGSNV N FND++PL D HD+DI TMYSQG
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG

A0A5A7TJS2 Retrotransposon protein4.8e-4972.31Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        M +KL  TNIQG   +DCRVKSLKK   +   MRGPSCSGFGWNE++QCIIA+ DLFDNWVKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFAD
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        VGSNV N FND VPL D +D+DI  MYSQG
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG

A0A5A7U0H7 Retrotransposon protein2.8e-5780Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        MAEKLPGTNIQ  STIDC VKSLKKTY AIAEMRGPSCSGFGWNEE+QCIIA+ DLFD+W+KSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF +
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        VGSNV N FND++PL D HD+DI TMYSQG
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQG

A0A5D3D8J6 Retrotransposon protein1.1e-4871.21Show/hide
Query:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD
        M +KL  TNIQG   +DCRVKSLKK   +   +RGPSCSGFGWNE++QCIIA+ DLFDNWVKSHP  +GLLHKSFPYYDDLSYVF +D+A EAR ETFAD
Subjt:  MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFAD

Query:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQGWI
        VGSNV N FND VPL D +D+DI  MYSQG I
Subjt:  VGSNVPNSFNDSVPLDDLHDKDISTMYSQGWI

A0A5D3DG22 Retrotransposon protein3.0e-4380.81Show/hide
Query:  EMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQG
        EMRGPSCSGFGWNEE+QCIIA+ DLFD+WVKSHP  KGLLHKSFPYYDDLSYVFG+D+A  AR+ETF DVGSNVPN FND++PL D HD+DI TMYSQG
Subjt:  EMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFNDSVPLDDLHDKDISTMYSQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein1.4e-0527.14Show/hide
Query:  RVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRD
        R K L++ Y  I  +     +GF W+     +IA  D+++ ++++HP  +    K+ P Y +L ++FG++
Subjt:  RVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRD

AT4G02210.1 unknown protein1.1e-0526.32Show/hide
Query:  IQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSN
        + G   +  R K+L+  ++++  +      GF W++  Q ++A + ++D ++K HP  +    KS P Y DL  V+  D   E +AE     G +
Subjt:  IQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSN

AT4G02210.2 unknown protein1.1e-0526.32Show/hide
Query:  IQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSN
        + G   +  R K+L+  ++++  +      GF W++  Q ++A + ++D ++K HP  +    KS P Y DL  V+  D   E +AE     G +
Subjt:  IQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATC
CTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAAT
CATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAAT
GACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGAAATTGCCCGGCACTAACATCCAAGGACCATCGACTATTGATTGTCGTGTGAAATCCCTTAAGAAAACTTATCAGGCAATTGCAGAAATGAGGGGGCCATC
CTGTAGTGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGAAACACGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGTGAAAGGGCTGTTACACAAAT
CATTTCCATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCAGGCAATAGAAGCACGTGCGGAGACGTTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAAT
GACAGTGTTCCACTTGATGATCTACATGACAAAGACATCTCGACGATGTATAGCCAAGGGTGGATATGTCCCCAAATAACATGGTAG
Protein sequenceShow/hide protein sequence
MAEKLPGTNIQGPSTIDCRVKSLKKTYQAIAEMRGPSCSGFGWNEEYQCIIAKHDLFDNWVKSHPGVKGLLHKSFPYYDDLSYVFGRDQAIEARAETFADVGSNVPNSFN
DSVPLDDLHDKDISTMYSQGWICPQITW