CuGenDBv2

Gene ID	PI0024408
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr11:17806250..17806504
RNA-Seq Expression	PI0024408
Synteny	PI0024408
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.8e-24

79.45

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Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.8e-24

79.45

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Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.8e-24

79.45

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Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

1.8e-24

79.45

Show/hide

Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.8e-24

79.45

Show/hide

Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP18 Putative gag-pol polyprotein

8.5e-25

79.45

Show/hide

Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

8.5e-25

79.45

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Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

A0A5A7UB25 Putative gag-pol polyprotein

8.5e-25

79.45

Show/hide

Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

A0A5D3CTV2 Putative polyprotein

8.5e-25

79.45

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Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

A0A5D3DNU1 Putative gag-pol polyprotein

8.5e-25

79.45

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Query:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN
        + QR RHAP RYGYA+LVAYALTCA DSIE EPLTFE+AIVSD ++QWKDAM+ ELFSL KNQTWSLVPKP N
Subjt:  KAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACCTACAGAACTATCAGCTTACTCATAGCAAAGGCTCAGAGGGTGAGACATGCTCCTACGAGGTATGGTTATGCTAATTTAGTTGCCTATGCTCTCACTTGTGCAGT
TGATAGTATTGAAGTAGAGCCTCTTACTTTTGAGGATGCAATTGTATCTGATTTCGAGGAACAATGGAAGGATGCTATGAAAGCAGAGTTGTTCTCATTGCAAAAGAATC
AGACGTGGTCATTGGTTCCAAAGCCTCATAATTAG

mRNA sequence

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Protein sequence

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MTYRTISLLIAKAQRVRHAPTRYGYANLVAYALTCAVDSIEVEPLTFEDAIVSDFEEQWKDAMKAELFSLQKNQTWSLVPKPHN

PI0024408 (gene) of Melon (PI 482460) v1 genome