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PI0024410 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024410
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationchr02:13503859..13504707
RNA-Seq ExpressionPI0024410
SyntenyPI0024410
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054681.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]5.0e-1943.83Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK
        MGKFK+D+K+FLVGL GK RK +IE RNGRKFG+    F         +   + G         +GW S     S+ LP F +  +    VT+PT   L+
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK

Query:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA
        K K G QP+ V+  +NK      L S Q D D GKKM + +GK + FAFEW+ T+IIKKLRA
Subjt:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.0e-1943.83Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK
        MGKFK+D+K+FLVGL GK RK +IE RNGRKFG+    F         +   + G         +GW S     S+ LP F +  +    VT+PT   L+
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK

Query:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA
        K K G QP+ V+  +NK      L S Q D D GKKM + +GK + FAFEW+ T+IIKKLRA
Subjt:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]1.7e-1935.96Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFG------------------------------------------------------------RKMKIFI
        MGK K+D+KEFLVG   K RK +IE RNGR FG                                                            RK +IFI
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFG------------------------------------------------------------RKMKIFI

Query:  PEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEGFQPSAVMLIDNKRLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRAT
        PEGS+G GWRSLA EIS LLP     +QK+ S++QP      K +E F+    M+                ++  +E+GK + FAFEW+ST+IIKKLRA+
Subjt:  PEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEGFQPSAVMLIDNKRLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRAT

Query:  SDW
        SDW
Subjt:  SDW

TYK29005.1 hypothetical protein E5676_scaffold120G001110 [Cucumis melo var. makuwa]3.3e-1048.28Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIFIPEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEG
        MGKF +++KEF VG  G +RK  IE +NGRKFG K++     G +G GWRSLA+EIS  LPG     QK+ + +Q +   ++K KEG
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIFIPEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEG

TrEMBL top hitse value%identityAlignment
A0A5A7UMB2 Retrotransposon protein, putative, unclassified2.4e-1943.83Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK
        MGKFK+D+K+FLVGL GK RK +IE RNGRKFG+    F         +   + G         +GW S     S+ LP F +  +    VT+PT   L+
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK

Query:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA
        K K G QP+ V+  +NK      L S Q D D GKKM + +GK + FAFEW+ T+IIKKLRA
Subjt:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA

A0A5D3C9P5 Ty3/gypsy retrotransposon protein2.4e-1943.83Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK
        MGKFK+D+K+FLVGL GK RK +IE RNGRKFG+    F         +   + G         +GW S     S+ LP F +  +    VT+PT   L+
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIF---------IPEGSKG---------KGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLK

Query:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA
        K K G QP+ V+  +NK      L S Q D D GKKM + +GK + FAFEW+ T+IIKKLRA
Subjt:  KRKEGFQPSAVMLIDNK-----RLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRA

A0A5D3CQQ0 Uncharacterized protein8.4e-2035.96Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFG------------------------------------------------------------RKMKIFI
        MGK K+D+KEFLVG   K RK +IE RNGR FG                                                            RK +IFI
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFG------------------------------------------------------------RKMKIFI

Query:  PEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEGFQPSAVMLIDNKRLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRAT
        PEGS+G GWRSLA EIS LLP     +QK+ S++QP      K +E F+    M+                ++  +E+GK + FAFEW+ST+IIKKLRA+
Subjt:  PEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEGFQPSAVMLIDNKRLESTQKDGDNGKKMMEENGKGMNFAFEWQSTIIIKKLRAT

Query:  SDW
        SDW
Subjt:  SDW

A0A5D3E0A1 Uncharacterized protein1.6e-1048.28Show/hide
Query:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIFIPEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEG
        MGKF +++KEF VG  G +RK  IE +NGRKFG K++     G +G GWRSLA+EIS  LPG     QK+ + +Q +   ++K KEG
Subjt:  MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIFIPEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGTTCAAGATGGATCAGAAGGAATTCTTGGTCGGGTTGGCAGGGAAGGAGAGGAAAAGTTTTATTGAGGTAAGAAATGGCAGGAAATTTGGGAGGAAAATGAA
AATTTTCATACCGGAAGGGAGCAAAGGAAAGGGTTGGAGATCTTTGGCAGAAGAGATTTCAGTATTGCTGCCGGGGTTTGCAAGGGCCGATCAGAAGTCAGTTTCAGTGA
CCCAACCAACTATGGCTTGGTTGAAGAAAAGGAAAGAAGGGTTTCAGCCATCGGCAGTGATGCTTATAGATAATAAGAGACTGGAAAGCACACAAAAGGATGGGGATAAT
GGGAAGAAGATGATGGAAGAAAATGGAAAGGGGATGAATTTTGCGTTTGAATGGCAATCGACGATCATAATCAAGAAGTTAAGAGCGACTTCTGATTGGAGACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGTTCAAGATGGATCAGAAGGAATTCTTGGTCGGGTTGGCAGGGAAGGAGAGGAAAAGTTTTATTGAGGTAAGAAATGGCAGGAAATTTGGGAGGAAAATGAA
AATTTTCATACCGGAAGGGAGCAAAGGAAAGGGTTGGAGATCTTTGGCAGAAGAGATTTCAGTATTGCTGCCGGGGTTTGCAAGGGCCGATCAGAAGTCAGTTTCAGTGA
CCCAACCAACTATGGCTTGGTTGAAGAAAAGGAAAGAAGGGTTTCAGCCATCGGCAGTGATGCTTATAGATAATAAGAGACTGGAAAGCACACAAAAGGATGGGGATAAT
GGGAAGAAGATGATGGAAGAAAATGGAAAGGGGATGAATTTTGCGTTTGAATGGCAATCGACGATCATAATCAAGAAGTTAAGAGCGACTTCTGATTGGAGACCCTAAAG
CGGTTGTTTGAACAGAGTCCGGCTATTTGTTGTGGCTTTAAAATTTTTTGTGCTAATCTTGCAATTGGAATTTGTGGGTCTAATTCAGAAGCAAAAAATCTTATTCGATC
GGATTGGTGTTCAAAATCGATGAGTTTTCCTTTCATCCGTGGGATTCCGTGTGATTGAAGAGGAAAGAAAGCAGGTGTTTGGGGGAGGATGGATTATGGCTCTTGACATT
CCCCCTT
Protein sequenceShow/hide protein sequence
MGKFKMDQKEFLVGLAGKERKSFIEVRNGRKFGRKMKIFIPEGSKGKGWRSLAEEISVLLPGFARADQKSVSVTQPTMAWLKKRKEGFQPSAVMLIDNKRLESTQKDGDN
GKKMMEENGKGMNFAFEWQSTIIIKKLRATSDWRP