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PI0024509 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024509
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionArabinogalactan protein 20
Genome locationchr06:944072..944734
RNA-Seq ExpressionPI0024509
SyntenyPI0024509
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004133836.1 arabinogalactan protein 41 [Cucumis sativus]2.2e-2692.11Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        M S NST RAFKALFTFFSLIFFILSPLVDA  APAPAPSSDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]7.0e-2582.72Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        MASSNST RAF  LFTFF+LI FILSPLVDA       APAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

XP_022979386.1 arabinogalactan peptide 20-like [Cucurbita maxima]1.2e-2481.48Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        MASSNSTFRAF  LFTFF+LI FILSPL+DA       APAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]4.1e-2584.81Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        MASSNST RAF  LFTFF+LI FILSPLVDA     APAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]4.1e-2588.16Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        M SSNST RAF  LFTFF+LIFFILSPLVDA  APAPAP+SDGTSIDQGIAYVLMLVALVLTYLIHPLDASSY+FF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein1.0e-2692.11Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        M S NST RAFKALFTFFSLIFFILSPLVDA  APAPAPSSDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA--APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

A0A6J1D1D7 arabinogalactan peptide 20-like1.1e-2382.28Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        MASS ST RAF +LFT F+LIFFI+SPLVDA     APAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

A0A6J1E8M6 arabinogalactan peptide 16-like3.4e-2582.72Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        MASSNST RAF  LFTFF+LI FILSPLVDA       APAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

A0A6J1F1F2 arabinogalactan peptide 20-like1.5e-2076.92Show/hide
Query:  ASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        +SS+ST  AF   FT F+LIFFILSPLV A     APAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FF
Subjt:  ASSNSTFRAFKALFTFFSLIFFILSPLVDA-----APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

A0A6J1IQM6 arabinogalactan peptide 20-like5.8e-2581.48Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF
        MASSNSTFRAF  LFTFF+LI FILSPL+DA       APAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA-------APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 163.0e-1565.33Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS      ALF+F   +   L+     APAPAP+SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

Q8L9T8 Arabinogalactan protein 412.4e-1269.49Show/hide
Query:  RAFKALFTFFSLIFFILSPLV---DAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        R F  + T  S+IF IL P+     AAPAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  RAFKALFTFFSLIFFILSPLV---DAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 221.5e-0961.54Show/hide
Query:  ALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        A+F   S+I   ++    ++PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  ALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 206.1e-1662.03Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA---APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS      A+   F+ +F ++SP   A   APAP+P+SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA---APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 162.2e-1665.33Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS      ALF+F   +   L+     APAPAP+SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

AT3G61640.1 arabinogalactan protein 204.4e-1762.03Show/hide
Query:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA---APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS      A+   F+ +F ++SP   A   APAP+P+SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTFRAFKALFTFFSLIFFILSPLVDA---APAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

AT5G24105.1 arabinogalactan protein 411.7e-1369.49Show/hide
Query:  RAFKALFTFFSLIFFILSPLV---DAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        R F  + T  S+IF IL P+     AAPAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  RAFKALFTFFSLIFFILSPLV---DAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 221.0e-1061.54Show/hide
Query:  ALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        A+F   S+I   ++    ++PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  ALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCCAATTCTACTTTTAGGGCTTTTAAAGCTCTCTTCACCTTCTTCTCCCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCAGCCCCTGCTCCCGCTCC
TTCTAGCGACGGGACCTCCATTGATCAGGGAATTGCGTACGTTCTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTCTTACAATTTTT
TCTGA
mRNA sequenceShow/hide mRNA sequence
CTCCGCCCCACTACTCTGCTCTCCTTCTTCAAACCATTTGGATTTTGATCAGAGTTTCCACACAAATTCCCTTCCTTTTGGAGAAGGAGAATTCAACCATCCATCAATGG
CGTCTTCCAATTCTACTTTTAGGGCTTTTAAAGCTCTCTTCACCTTCTTCTCCCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCAGCCCCTGCTCCCGCTCCTTCT
AGCGACGGGACCTCCATTGATCAGGGAATTGCGTACGTTCTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCATCTTCTTACAATTTTTTCTG
AATTGAATTGAATTGAATTCTTCTTCCTAGGATTGTAGCAATGTAGGCGATGTTTGTGGATGTTTGAGAAGGAACGAGACCCAACTTTTTCTTCTCTCTTTTTGTGATAA
AATCAAAGTGTATATTTGGGTTTCGCAGATTTTGAACAATTGCTCCATTTAATTCATTGTTTATTCGATTA
Protein sequenceShow/hide protein sequence
MASSNSTFRAFKALFTFFSLIFFILSPLVDAAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFF