; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0024530 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024530
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:24294893..24301542
RNA-Seq ExpressionPI0024530
SyntenyPI0024530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.0e-7470.56Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        M ENSQNFGNRA ELDN LTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLR+GKIL  P ++EK  +S  L +N +N+ KE
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        E  + N S  + K+
Subjt:  ENKQNNASSPSPKD

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-7370.09Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQNFGNRASELDNSLTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQM+QLT  +SK++GKGKLPAQPDH NVSAISLR+GKIL  P ++EK  +S  L +N +N+ KE
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        E  + N  S + K+
Subjt:  ENKQNNASSPSPKD

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-7470.09Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQ+F NRASELDNSLTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLR+GKIL  P ++EK ++S  L +N +N+ KE
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        E  + N S  + K+
Subjt:  ENKQNNASSPSPKD

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-7471.03Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQ+F NRASELDNSLTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDP GNTYN+GWRDNP LRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQP-QATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA S+S+NQGTNLED++KALA NT+SFQ EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLR+GKIL  P ++EK  +S  L +N +N+ KE
Subjt:  QQP-QATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        EN + N   PSP +
Subjt:  ENKQNNASSPSPKD

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.9e-7472.28Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENS++FGNRASELDNSLTKEVSELKSQMLNMT LLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDP  NTYN+GWRDN NLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLINENKKKEE
        Q+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLR+GKIL  P ++EK  +S  L +N   + +E
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLINENKKKEE

Query:  NK
         K
Subjt:  NK

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein9.3e-7470.09Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQNFGNRASELDNSLTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA  +S+NQGTNLED++ ALATNT+SFQ EMKQQM+QLT  +SK++GKGKLPAQPDH NVSAISLR+GKIL  P ++EK  +S  L +N +N+ KE
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        E  + N  S + K+
Subjt:  ENKQNNASSPSPKD

A0A5A7VE49 Retrotransposon gag protein1.9e-7471.03Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQ+F NRASELDNSLTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDP GNTYN+GWRDNP LRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQP-QATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA S+S+NQGTNLED++KALA NT+SFQ EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLR+GKIL  P ++EK  +S  L +N +N+ KE
Subjt:  QQP-QATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        EN + N   PSP +
Subjt:  ENKQNNASSPSPKD

A0A5D3CB46 Retrotransposon gag protein1.9e-7472.28Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENS++FGNRASELDNSLTKEVSELKSQMLNMT LLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDP  NTYN+GWRDN NLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLINENKKKEE
        Q+  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLR+GKIL  P ++EK  +S  L +N   + +E
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLINENKKKEE

Query:  NK
         K
Subjt:  NK

A0A5D3CRR8 Retrotransposon gag protein1.9e-7470.09Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        MAENSQ+F NRASELDNSLTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLR+GKIL  P ++EK ++S  L +N +N+ KE
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        E  + N S  + K+
Subjt:  ENKQNNASSPSPKD

E5GBZ4 Retrotransposon gag protein4.9e-7570.56Show/hide
Query:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN
        M ENSQNFGNRA ELDN LTKEVSELKSQMLNMT LLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+N
Subjt:  MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNN

Query:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE
        Q+  QA  +S+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLR+GKIL  P ++EK  +S  L +N +N+ KE
Subjt:  QQ-PQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLIN-ENKKKE

Query:  ENKQNNASSPSPKD
        E  + N S  + K+
Subjt:  ENKQNNASSPSPKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAAATTCACAGAATTTTGGCAATAGAGCATCCGAGCTCGACAATTCATTGACGAAAGAGGTTAGTGAGCTTAAATCACAAATGTTAAATATGACTCAATTGCT
TACTTCTTTTGTTCAAGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCA
TTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTCTTCCTCAAAT
AATCAAGGTACAAATTTAGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAACAGATGTCTCAATTAACCAATGCAATAAGTAA
GTTAGAAGGCAAAGGTAAGCTGCCTGCTCAGCCTGACCACGCAAACGTAAGTGCCATCTCACTTAGAAACGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTAT
CTTCTAGCCCTGACCTTCTAATTAATGAAAATAAGAAAAAGGAAGAAAATAAACAAAACAATGCCTCTTCTCCTTCTCCAAAAGACTGCCTTCTTCGCGAGGCAAGTTCT
TCACAACCAGAGCTCCGCGAGATACTTCATCTGCAGAAGTACATATCCATACCGCGCAACACAAACATTTGTTCGCCAACTCACCAAGACAAGCTCACTTACCCGAAACG
CATGAAGTCTGCAATCAGCTCGCAACCAGCTCGCATAACGCATCACTCTTCTCAATCAGCTCGCAAATCTTCTGATCGCCTAAAAACGGTTATTATAACCGCCAAGCCCA
AGCCCATTGTAGCAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAAATTCACAGAATTTTGGCAATAGAGCATCCGAGCTCGACAATTCATTGACGAAAGAGGTTAGTGAGCTTAAATCACAAATGTTAAATATGACTCAATTGCT
TACTTCTTTTGTTCAAGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCA
TTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTCTTCCTCAAAT
AATCAAGGTACAAATTTAGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAACAGATGTCTCAATTAACCAATGCAATAAGTAA
GTTAGAAGGCAAAGGTAAGCTGCCTGCTCAGCCTGACCACGCAAACGTAAGTGCCATCTCACTTAGAAACGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTAT
CTTCTAGCCCTGACCTTCTAATTAATGAAAATAAGAAAAAGGAAGAAAATAAACAAAACAATGCCTCTTCTCCTTCTCCAAAAGACTGCCTTCTTCGCGAGGCAAGTTCT
TCACAACCAGAGCTCCGCGAGATACTTCATCTGCAGAAGTACATATCCATACCGCGCAACACAAACATTTGTTCGCCAACTCACCAAGACAAGCTCACTTACCCGAAACG
CATGAAGTCTGCAATCAGCTCGCAACCAGCTCGCATAACGCATCACTCTTCTCAATCAGCTCGCAAATCTTCTGATCGCCTAAAAACGGTTATTATAACCGCCAAGCCCA
AGCCCATTGTAGCAAAATAA
Protein sequenceShow/hide protein sequence
MAENSQNFGNRASELDNSLTKEVSELKSQMLNMTQLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPQATSSSN
NQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPPSEEKVSSSPDLLINENKKKEENKQNNASSPSPKDCLLREASS
SQPELREILHLQKYISIPRNTNICSPTHQDKLTYPKRMKSAISSQPARITHHSSQSARKSSDRLKTVIITAKPKPIVAK