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PI0024572 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024572
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSKP1-like protein
Genome locationchr08:837584..838653
RNA-Seq ExpressionPI0024572
SyntenyPI0024572
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR001232 - S-phase kinase-associated protein 1-like
IPR011333 - SKP1/BTB/POZ domain superfamily
IPR016073 - SKP1 component, POZ domain
IPR016897 - S-phase kinase-associated protein 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585523.1 SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. sororia]4.9e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

KAG7020437.1 SKP1-like protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

KAG7029453.1 SKP1-like protein 1B [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2895.71Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MS+GRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

XP_004143010.1 SKP1-like protein 1B [Cucumis sativus]4.9e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

XP_022951749.1 SKP1-like protein 1B [Cucurbita moschata]4.9e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

TrEMBL top hitse value%identityAlignment
A0A0A0LMK0 SKP1-like protein2.4e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

A0A6J1GJP4 SKP1-like protein2.4e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

A0A6J1HGN0 SKP1-like protein2.4e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

A0A6J1K9X2 SKP1-like protein2.4e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

A0A6J1KLK5 SKP1-like protein2.4e-2997.14Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE
        MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIED+CADSGIPLPNVNSKIL KVIEYCKKHVESPKPE
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPE

SwissProt top hitse value%identityAlignment
Q39255 SKP1-like protein 1A2.7e-2265.38Show/hide
Query:  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEIVLAPSTTTS
        S +KI LKSSDGE FEV+EAVALESQTI HM+ED+C D+G+PLPNV SKIL KVIEYCK+HVE+   +        TS
Subjt:  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEIVLAPSTTTS

Q6PL11 SKP1-like protein 12.7e-2280.65Show/hide
Query:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES
        + ITLKSSDGE FEV+EAVA+ESQTI+HMIED+CAD+GIPLPNVNSKIL KVIEYC KHV +
Subjt:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES

Q9FHW7 SKP1-like protein 1B1.2e-2561.9Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVE-SPKPEIV--LAPSTTTSRLGTANSSNCGHECDLA
        MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIED+C D+GIPLPNV SKIL KVIEYCK+HVE + K E     A +TTT+ + + +S       D  
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVE-SPKPEIV--LAPSTTTSRLGTANSSNCGHECDLA

Query:  ILVVD
         + VD
Subjt:  ILVVD

Q9LNT9 SKP1-like protein 41.1e-2075.81Show/hide
Query:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES
        + I LKSSDGE FE++EAVA++SQTIKHMIED+CAD+GIPLPNV   IL KVIEYCKKHVE+
Subjt:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES

Q9SL93 SKP1-like protein 38.8e-2177.42Show/hide
Query:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES
        + I LKSSDGE FEV+EAVA+ESQTIKHMIED+C D+GIPLPNV   IL KVIEYCKKHVE+
Subjt:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES

Arabidopsis top hitse value%identityAlignment
AT1G20140.1 SKP1-like 48.2e-2275.81Show/hide
Query:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES
        + I LKSSDGE FE++EAVA++SQTIKHMIED+CAD+GIPLPNV   IL KVIEYCKKHVE+
Subjt:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES

AT1G75950.1 S phase kinase-associated protein 11.9e-2365.38Show/hide
Query:  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEIVLAPSTTTS
        S +KI LKSSDGE FEV+EAVALESQTI HM+ED+C D+G+PLPNV SKIL KVIEYCK+HVE+   +        TS
Subjt:  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEIVLAPSTTTS

AT2G25700.1 SKP1-like 36.2e-2277.42Show/hide
Query:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES
        + I LKSSDGE FEV+EAVA+ESQTIKHMIED+C D+GIPLPNV   IL KVIEYCKKHVE+
Subjt:  RKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVES

AT4G34210.1 SKP1-like 112.5e-1868.85Show/hide
Query:  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKH
        S + I L SSDG+ FEV+EAVA++SQTI HM+ED+C   GIPL NV SKIL KVIEYCKKH
Subjt:  SGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKH

AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein8.4e-2761.9Show/hide
Query:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVE-SPKPEIV--LAPSTTTSRLGTANSSNCGHECDLA
        MS+ RKITLKSSDGE FE+DEAVALESQTIKHMIED+C D+GIPLPNV SKIL KVIEYCK+HVE + K E     A +TTT+ + + +S       D  
Subjt:  MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVE-SPKPEIV--LAPSTTTSRLGTANSSNCGHECDLA

Query:  ILVVD
         + VD
Subjt:  ILVVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGA
GTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGCCCAAGGTTATCGAGTACTGCAAGAAGCACGTCGAGTCCCCTAAGCCCGAGATCGTACTGG
CTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAACTGTGGTCACGAATGTGACCTGGCTATTCTGGTCGTTGATAGTGAAGAATTCTGGGTAGACACC
AACTGTTCGGTTTGGGAAATATTCCTATCTTGCAGAAATACCACCAGAGTATCTCTCATATTCAGAGAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTGGCCGGAAAATCACCTTGAAGAGCTCCGACGGCGAGATCTTCGAGGTCGACGAAGCGGTCGCCTTGGAGTCACAAACGATCAAGCACATGATCGAAGACGA
GTGCGCCGATAGTGGAATCCCCCTTCCTAATGTCAACAGCAAGATCTTGCCCAAGGTTATCGAGTACTGCAAGAAGCACGTCGAGTCCCCTAAGCCCGAGATCGTACTGG
CTCCGTCGACGACGACCTCAAGACTTGGGACAGCGAATTCGTCAAACTGTGGTCACGAATGTGACCTGGCTATTCTGGTCGTTGATAGTGAAGAATTCTGGGTAGACACC
AACTGTTCGGTTTGGGAAATATTCCTATCTTGCAGAAATACCACCAGAGTATCTCTCATATTCAGAGAAACATGA
Protein sequenceShow/hide protein sequence
MSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDECADSGIPLPNVNSKILPKVIEYCKKHVESPKPEIVLAPSTTTSRLGTANSSNCGHECDLAILVVDSEEFWVDT
NCSVWEIFLSCRNTTRVSLIFRET