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PI0024577 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024577
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr01:21496977..21499507
RNA-Seq ExpressionPI0024577
SyntenyPI0024577
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037649.1 uncharacterized protein E6C27_scaffold277G003120 [Cucumis melo var. makuwa]4.6e-0429.63Show/hide
Query:  IDPPM----SPTSSEDNVFLAELLKRHKMSFDLHITPDFVPVMPPSTDENLL-----PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNV
        I PP+    +PT S+D V L  L K  K+  +     + +P++  +  E L       P+ + + ++ + + TK   +KI  N+ SV ID +SFH E NV
Subjt:  IDPPM----SPTSSEDNVFLAELLKRHKMSFDLHITPDFVPVMPPSTDENLL-----PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNV

Query:  QKWKIFRQIR-GIHTRNLEARSYAGNQATLNAWLG
        Q+WK   Q R    T ++    ++     +N +LG
Subjt:  QKWKIFRQIR-GIHTRNLEARSYAGNQATLNAWLG

KAA0045978.1 uncharacterized protein E6C27_scaffold243G005280 [Cucumis melo var. makuwa]4.6e-0436.05Show/hide
Query:  HITPDFVPV-MPPSTDENLLP-------------PANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIR
        HI+ D  P  +PP TD+   P             P      +V + + TK + +KI  N+ SVPID +SFH   NVQ+WK   Q R
Subjt:  HITPDFVPV-MPPSTDENLLP-------------PANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIR

KAA0063826.1 uncharacterized protein E6C27_scaffold827G00450 [Cucumis melo var. makuwa]2.1e-0442.17Show/hide
Query:  PDFVPVMPPSTDENLLPPANE----NLSEVNKRVF--------TKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGI
        P+ VP +PP+ D+NL  P+        S++ +R F        TK   +KI PN+ SVPID +SFH E +VQ WK F  +RGI
Subjt:  PDFVPVMPPSTDENLLPPANE----NLSEVNKRVF--------TKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGI

TYK18114.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.6e-0435.48Show/hide
Query:  PVMPPSTDENLL--PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGIHTRNLEARSYAGNQATLNAWLGGP
        P +PP++ E L+   PA     +  + + TK   +KI PN+ SVPID +S H E NVQ+WK   Q           RS+ GN   L+     P
Subjt:  PVMPPSTDENLL--PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGIHTRNLEARSYAGNQATLNAWLGGP

TYK22185.1 uncharacterized protein E5676_scaffold333G00540 [Cucumis melo var. makuwa]5.5e-0539.08Show/hide
Query:  SFDLHIT-PDFVPVMPPSTDEN-LLPPANENLSEVNK-----------RVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQ
        S D H + PD VP +P + D+N ++PPA+ ++   +K            + TK   +KI PN+ SVPID +SFH E +VQ+WK   Q
Subjt:  SFDLHIT-PDFVPVMPPSTDEN-LLPPANENLSEVNK-----------RVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQ

TrEMBL top hitse value%identityAlignment
A0A5A7TSY4 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-0436.05Show/hide
Query:  HITPDFVPV-MPPSTDENLLP-------------PANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIR
        HI+ D  P  +PP TD+   P             P      +V + + TK + +KI  N+ SVPID +SFH   NVQ+WK   Q R
Subjt:  HITPDFVPV-MPPSTDENLLP-------------PANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIR

A0A5A7VBM5 DUF4218 domain-containing protein1.0e-0442.17Show/hide
Query:  PDFVPVMPPSTDENLLPPANE----NLSEVNKRVF--------TKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGI
        P+ VP +PP+ D+NL  P+        S++ +R F        TK   +KI PN+ SVPID +SFH E +VQ WK F  +RGI
Subjt:  PDFVPVMPPSTDENLLPPANE----NLSEVNKRVF--------TKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGI

A0A5D3D3G3 Putative gag-pol polyprotein7.7e-0535.48Show/hide
Query:  PVMPPSTDENLL--PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGIHTRNLEARSYAGNQATLNAWLGGP
        P +PP++ E L+   PA     +  + + TK   +KI PN+ SVPID +S H E NVQ+WK   Q           RS+ GN   L+     P
Subjt:  PVMPPSTDENLL--PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQIRGIHTRNLEARSYAGNQATLNAWLGGP

A0A5D3DF71 Uncharacterized protein2.6e-0539.08Show/hide
Query:  SFDLHIT-PDFVPVMPPSTDEN-LLPPANENLSEVNK-----------RVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQ
        S D H + PD VP +P + D+N ++PPA+ ++   +K            + TK   +KI PN+ SVPID +SFH E +VQ+WK   Q
Subjt:  SFDLHIT-PDFVPVMPPSTDEN-LLPPANENLSEVNK-----------RVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQKWKIFRQ

A0A5D3DGP4 Uncharacterized protein2.2e-0429.63Show/hide
Query:  IDPPM----SPTSSEDNVFLAELLKRHKMSFDLHITPDFVPVMPPSTDENLL-----PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNV
        I PP+    +PT S+D V L  L K  K+  +     + +P++  +  E L       P+ + + ++ + + TK   +KI  N+ SV ID +SFH E NV
Subjt:  IDPPM----SPTSSEDNVFLAELLKRHKMSFDLHITPDFVPVMPPSTDENLL-----PPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNV

Query:  QKWKIFRQIR-GIHTRNLEARSYAGNQATLNAWLG
        Q+WK   Q R    T ++    ++     +N +LG
Subjt:  QKWKIFRQIR-GIHTRNLEARSYAGNQATLNAWLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGATATTGGTGGTTCCTCTGTCGAGTTTATTATTGAGGAAATTGTTATTGATCCTCCCATGTCTCCAACCTCCTCCGAGGATAATGTTTTTCTAGCTGAACT
CTTAAAGCGCCATAAGATGTCTTTTGACCTTCATATTACTCCTGACTTTGTCCCTGTCATGCCTCCATCCACTGATGAAAATTTGCTCCCTCCTGCCAATGAAAATCTTT
CAGAGGTTAATAAGCGTGTGTTTACTAAGGTTATTCATCGTAAGATTCTTCCCAATGTGTCTTCTGTCCCTATTGATAGTGTGTCCTTTCACTGTGAGGGCAATGTGCAA
AAATGGAAGATTTTTAGGCAAATAAGAGGTATCCACACGAGGAACCTTGAAGCGAGGAGCTACGCGGGCAACCAGGCGACCTTGAACGCATGGTTAGGCGGACCTGAGCT
ATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGATATTGGTGGTTCCTCTGTCGAGTTTATTATTGAGGAAATTGTTATTGATCCTCCCATGTCTCCAACCTCCTCCGAGGATAATGTTTTTCTAGCTGAACT
CTTAAAGCGCCATAAGATGTCTTTTGACCTTCATATTACTCCTGACTTTGTCCCTGTCATGCCTCCATCCACTGATGAAAATTTGCTCCCTCCTGCCAATGAAAATCTTT
CAGAGGTTAATAAGCGTGTGTTTACTAAGGTTATTCATCGTAAGATTCTTCCCAATGTGTCTTCTGTCCCTATTGATAGTGTGTCCTTTCACTGTGAGGGCAATGTGCAA
AAATGGAAGATTTTTAGGCAAATAAGAGGTATCCACACGAGGAACCTTGAAGCGAGGAGCTACGCGGGCAACCAGGCGACCTTGAACGCATGGTTAGGCGGACCTGAGCT
ATAG
Protein sequenceShow/hide protein sequence
MASDIGGSSVEFIIEEIVIDPPMSPTSSEDNVFLAELLKRHKMSFDLHITPDFVPVMPPSTDENLLPPANENLSEVNKRVFTKVIHRKILPNVSSVPIDSVSFHCEGNVQ
KWKIFRQIRGIHTRNLEARSYAGNQATLNAWLGGPEL