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PI0024611 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024611
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr01:19830824..19831285
RNA-Seq ExpressionPI0024611
SyntenyPI0024611
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.2e-4763.82Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        ++FLTKYHA+ D SNKEVV R+P K E+KF  DK+VE   +I VLKARKL+K  H +YLA +++T A RN+P  +PIVCEY+DVFPKE+SGL P+RE++F
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLF
        TIE+V  T P+SQTPYRMA  ELKELK+QL+EL+EK YI+P TSPW A +LF
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLF

KAA0041109.1 hypothetical protein E6C27_scaffold128G00120 [Cucumis melo var. makuwa]1.5e-4562.75Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        MDFL  ++A +DC  KEVV R+PG  EV F G +K    S+ISVLKA KL++KG TA+LA IV  Q  +  P ++P+V E+LDVFP ++SGLPP RE+EF
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV
        TIE++P T P+SQ PYRMAPSELKELK QL+EL++KGYIRPS SPWGA VLFV
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV

KAA0042309.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-4663.4Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        MDFL  ++A +DC  KEVV R+PG  EV F G +K    S+ISVLKA KL++KG TA+LA IV  Q  +  P ++P+V E+LDVFP ++SGLPP RE+EF
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV
        TIE++P T P+SQ PYRMAPSELKELK QL+EL++KGYIRPS SPWGALVLFV
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV

KAA0061410.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]3.0e-4672.09Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        MDFLTKYHA+L+CSNKEVV R+P KFE+KF+GDK V+LA + SVL ARKLIKKGHT YLA +VDTQ ++ +P  +PIVCEYLDVFP E++GLPPKRE+E 
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQ
         IEV PRT P+SQT YRM PSELKELK Q
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQ

TYK01558.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-4866.01Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        M FLTKYHA  DCSN EVV +E  KF+VK + +KKVELA++ISVLKA K I+K +  YL  IVDTQA+ N+P ++ IVC+YLDVF KE++GLP KRE++F
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV
        TIEVV  T P+SQT Y M PSELKELKDQLEELLE+ YI+P+TSPWG  +LFV
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV

TrEMBL top hitse value%identityAlignment
A0A5A7TIG0 Reverse transcriptase7.2e-4662.75Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        MDFL  ++A +DC  KEVV R+PG  EV F G +K    S+ISVLKA KL++KG TA+LA IV  Q  +  P ++P+V E+LDVFP ++SGLPP RE+EF
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV
        TIE++P T P+SQ PYRMAPSELKELK QL+EL++KGYIRPS SPWGA VLFV
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV

A0A5A7TLU6 Reverse transcriptase1.9e-4663.4Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        MDFL  ++A +DC  KEVV R+PG  EV F G +K    S+ISVLKA KL++KG TA+LA IV  Q  +  P ++P+V E+LDVFP ++SGLPP RE+EF
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV
        TIE++P T P+SQ PYRMAPSELKELK QL+EL++KGYIRPS SPWGALVLFV
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV

A0A5A7V2B5 Gag protease polyprotein-like protein1.4e-4672.09Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        MDFLTKYHA+L+CSNKEVV R+P KFE+KF+GDK V+LA + SVL ARKLIKKGHT YLA +VDTQ ++ +P  +PIVCEYLDVFP E++GLPPKRE+E 
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQ
         IEV PRT P+SQT YRM PSELKELK Q
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQ

A0A5D3BRB8 DNA/RNA polymerases superfamily protein9.0e-4966.01Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        M FLTKYHA  DCSN EVV +E  KF+VK + +KKVELA++ISVLKA K I+K +  YL  IVDTQA+ N+P ++ IVC+YLDVF KE++GLP KRE++F
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV
        TIEVV  T P+SQT Y M PSELKELKDQLEELLE+ YI+P+TSPWG  +LFV
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV

A0A5D3D2P1 Putative Retrotransposon protein5.9e-4863.82Show/hide
Query:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF
        ++FLTKYHA+ D SNKEVV R+P K E+KF  DK+VE   +I VLKARKL+K  H +YLA +++T A RN+P  +PIVCEY+DVFPKE+SGL P+RE++F
Subjt:  MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEF

Query:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLF
        TIE+V  T P+SQTPYRMA  ELKELK+QL+EL+EK YI+P TSPW A +LF
Subjt:  TIEVVPRTKPVSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTCTCACTAAGTATCACGCGGTGTTGGATTGCTCCAATAAGGAGGTAGTACAAAGAGAACCAGGAAAATTTGAAGTTAAATTTATAGGCGACAAGAAAGTGGA
ATTAGCAAGTATGATATCAGTACTTAAGGCAAGGAAGTTGATTAAGAAGGGGCATACCGCCTACCTTGCTCGCATAGTTGACACCCAAGCGATAAGGAATAATCCAAGAA
ACATACCTATAGTTTGCGAATACTTGGATGTGTTTCCAAAAGAAATAAGTGGATTACCTCCAAAAAGAGAGGTTGAGTTTACAATTGAAGTTGTGCCTAGAACAAAACCA
GTTTCTCAAACTCCTTACCGCATGGCACCAAGCGAGCTGAAAGAATTGAAAGATCAATTGGAGGAATTATTAGAGAAGGGTTATATTCGACCTAGTACCTCACCTTGGGG
AGCCCTTGTTCTATTTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTCTCACTAAGTATCACGCGGTGTTGGATTGCTCCAATAAGGAGGTAGTACAAAGAGAACCAGGAAAATTTGAAGTTAAATTTATAGGCGACAAGAAAGTGGA
ATTAGCAAGTATGATATCAGTACTTAAGGCAAGGAAGTTGATTAAGAAGGGGCATACCGCCTACCTTGCTCGCATAGTTGACACCCAAGCGATAAGGAATAATCCAAGAA
ACATACCTATAGTTTGCGAATACTTGGATGTGTTTCCAAAAGAAATAAGTGGATTACCTCCAAAAAGAGAGGTTGAGTTTACAATTGAAGTTGTGCCTAGAACAAAACCA
GTTTCTCAAACTCCTTACCGCATGGCACCAAGCGAGCTGAAAGAATTGAAAGATCAATTGGAGGAATTATTAGAGAAGGGTTATATTCGACCTAGTACCTCACCTTGGGG
AGCCCTTGTTCTATTTGTGTAA
Protein sequenceShow/hide protein sequence
MDFLTKYHAVLDCSNKEVVQREPGKFEVKFIGDKKVELASMISVLKARKLIKKGHTAYLARIVDTQAIRNNPRNIPIVCEYLDVFPKEISGLPPKREVEFTIEVVPRTKP
VSQTPYRMAPSELKELKDQLEELLEKGYIRPSTSPWGALVLFV