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PI0024632 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024632
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:20402332..20403770
RNA-Seq ExpressionPI0024632
SyntenyPI0024632
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.7e-6469.02Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK
        SFQ +MKQQM+ LT AISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP           + L +K+E KEEK+ET+  PS SK
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-6366.84Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSKELHDEF
        SFQ +MKQQM+ LT AISK++GKGKL AQ ++ANVS +SLRSGKIL+T           P+ L  K+E KEEK+ET+  P  SK  +D+F
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSKELHDEF

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-6369.19Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT

Query:  ISFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSK
        +SFQ +MKQQM+ LT AISK++GKGKLPAQ DHANVS ISLRSGKIL+T           P+ L +K+E KEEK+ET+  PS SK
Subjt:  ISFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-6369.23Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPST
        SFQ KMKQQM+ LT AISK++GKGKLPAQPDHANVS ISLRSGKIL+T           P+ L +K+E KEEK+++    +T
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPST

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]5.9e-6568.48Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK
        SFQ KMKQQM+ LT  ISK++GKGKLPAQPDH NVS ISLRSGKIL+TP           + L +K++ KEEK+ET+S  S SK
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.8e-6568.48Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+ N++R+YDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK
        SFQ KMKQQM+ LT  ISK++GKGKLPAQPDH NVS ISLRSGKIL+TP           + L +K++ KEEK+ET+S  S SK
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK

A0A5A7VQ60 Retrotransposon gag protein9.1e-6469.19Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT

Query:  ISFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSK
        +SFQ +MKQQM+ LT AISK++GKGKLPAQ DHANVS ISLRSGKIL+T           P+ L +K+E KEEK+ET+  PS SK
Subjt:  ISFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSK

A0A5D3CB46 Retrotransposon gag protein9.1e-6469.23Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++R+YDPHSNTYN GWRDN NLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPST
        SFQ KMKQQM+ LT AISK++GKGKLPAQPDHANVS ISLRSGKIL+T           P+ L +K+E KEEK+++    +T
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPST

A0A5D3CRR8 Retrotransposon gag protein2.0e-6366.84Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSKELHDEF
        SFQ +MKQQM+ LT AISK++GKGKL AQ ++ANVS +SLRSGKIL+T           P+ L  K+E KEEK+ET+  P  SK  +D+F
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILET-----------PILLENKDEKKEEKLETSSLPSTSKELHDEF

E5GBZ4 Retrotransposon gag protein8.2e-6569.02Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK
        SFQ +MKQQM+ LT AISK++GKGKLPAQPD+ANVS ISLRSGKIL+TP           + L +K+E KEEK+ET+  PS SK
Subjt:  SFQNKMKQQMSHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETP-----------ILLENKDEKKEEKLETSSLPSTSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGA
CTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAATGTCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATAAAATGAAACAACAGATG
TCTCATCTAACCAATGCCATAAGTAAATTGGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGTCATCTCGCTTAGAAGTGGTAAGATTCTGGA
AACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCAACTTCTAAAGAATTGCATGATGAATTTGATGAATTGTCTA
TTAATAATGAATTTGCTAAACAAGAATTAGATAAAATTAATGATGAGCTTTGTTTGCATGAATTTGATGATGAGAAAGAGATGGTAGAAGTAGAAATGGATGAAAAATTA
AATCTTGATGGAATAAATTCTAACGCTTTTTTCTTTTCTCCCCAGGAACAAGGGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGTGGGGTATGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGA
CTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAATGTCGGTTGGAGAGACAACCCTAATCTGAGATGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATAAAATGAAACAACAGATG
TCTCATCTAACCAATGCCATAAGTAAATTGGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGTCATCTCGCTTAGAAGTGGTAAGATTCTGGA
AACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCAACTTCTAAAGAATTGCATGATGAATTTGATGAATTGTCTA
TTAATAATGAATTTGCTAAACAAGAATTAGATAAAATTAATGATGAGCTTTGTTTGCATGAATTTGATGATGAGAAAGAGATGGTAGAAGTAGAAATGGATGAAAAATTA
AATCTTGATGGAATAAATTCTAACGCTTTTTTCTTTTCTCCCCAGGAACAAGGGATTTAG
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNVGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNKMKQQM
SHLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILETPILLENKDEKKEEKLETSSLPSTSKELHDEFDELSINNEFAKQELDKINDELCLHEFDDEKEMVEVEMDEKL
NLDGINSNAFFFSPQEQGI