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PI0024650 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0024650
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr06:12942665..12943476
RNA-Seq ExpressionPI0024650
SyntenyPI0024650
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]1.8e-3877.27Show/hide
Query:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV
        PA NAN+ VREA++RWVKAN+KA VYILA+MTDV +KKH+S+  AK IM+SL EMFGQP +SLRH+AIK IYTKRMKEGTSVREHV  LDMMMHFNI EV
Subjt:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV

Query:  NSGPIDEANQ
        N GPIDEANQ
Subjt:  NSGPIDEANQ

KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-3774.77Show/hide
Query:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE
        TPASNAN+  REA++RW+KANEKA VYILA+M+DV +KKHESL  AK IM+SL  MFGQP +SLRHKAIK IYTKRMKEGTS+REHVL+  MM+HFNI E
Subjt:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE

Query:  VNSGPIDEANQ
        VN G IDEANQ
Subjt:  VNSGPIDEANQ

TYJ96575.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-3773.87Show/hide
Query:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE
        TPASNAN+  R+A++RW+KANEKACV+ILA+M+DV +KKHESL + K IM+SL  MFGQP  SLRH+AIK IYTKRMKEGTS+REHV  LDMMMHFNI E
Subjt:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE

Query:  VNSGPIDEANQ
        VN G IDEANQ
Subjt:  VNSGPIDEANQ

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]1.5e-3774.77Show/hide
Query:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV
        P SNAN+ VREA++RWVKANEKA +YILA+M+DV +KKHESL  AK I++SL E+FGQP +SLRH+AIK IYTKRMKEGTSVREHV  LDMMM+FNI E 
Subjt:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV

Query:  NSGPIDEANQD
        N GPIDEANQD
Subjt:  NSGPIDEANQD

XP_038891685.1 uncharacterized protein LOC120081079 [Benincasa hispida]4.1e-3877.27Show/hide
Query:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV
        PASNAN+ VREA++RWVKANEKACVYILA+M+DV +KKHESL  AK I++SL EMFGQ  +SLRH+AIK IYTKRMKEGTSVREHV  LDMMM+FNI +V
Subjt:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV

Query:  NSGPIDEANQ
        N GPIDEANQ
Subjt:  NSGPIDEANQ

TrEMBL top hitse value%identityAlignment
A0A5A7TWX1 Gag/pol protein2.8e-3774.77Show/hide
Query:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE
        TPASNAN+  REA++RW+KANEKA VYILA+M+DV +KKHESL  AK IM+SL  MFGQP +SLRHKAIK IYTKRMKEGTS+REHVL+  MM+HFNI E
Subjt:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE

Query:  VNSGPIDEANQ
        VN G IDEANQ
Subjt:  VNSGPIDEANQ

A0A5A7U2U6 Gag/pol protein8.3e-3773.95Show/hide
Query:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE
        TPASNANQ VREA++RWVKANEKA VYI A+M+DV +KKHESL  AK IM+SL EMFGQP +SLRH+AIK IYTK+MKEGTSVREHV  LDMMMHFNI E
Subjt:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE

Query:  VNSGPIDEANQDDEKKKRM
        VN GPI+E N    K K M
Subjt:  VNSGPIDEANQDDEKKKRM

A0A5D3BDN4 Gag/pol protein2.2e-3773.87Show/hide
Query:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE
        TPASNAN+  R+A++RW+KANEKACV+ILA+M+DV +KKHESL + K IM+SL  MFGQP  SLRH+AIK IYTKRMKEGTS+REHV  LDMMMHFNI E
Subjt:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE

Query:  VNSGPIDEANQ
        VN G IDEANQ
Subjt:  VNSGPIDEANQ

A0A5D3BLU7 Gag/pol protein8.3e-3771.43Show/hide
Query:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE
        TPASNAN+  REA++RW+KANEKACV ILA+M+DV  KKHESL +AK IMNSL  MF QP +SLRHKAIK IYTKRMKE TSVREHV  LDMM+HFNI E
Subjt:  TPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDE

Query:  VNSGPIDEANQDDEKKKRM
        VN   IDEANQ++   KR+
Subjt:  VNSGPIDEANQDDEKKKRM

E2GK51 Gag/pol protein (Fragment)8.8e-3977.27Show/hide
Query:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV
        PA NAN+ VREA++RWVKAN+KA VYILA+MTDV +KKH+S+  AK IM+SL EMFGQP +SLRH+AIK IYTKRMKEGTSVREHV  LDMMMHFNI EV
Subjt:  PASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEV

Query:  NSGPIDEANQ
        N GPIDEANQ
Subjt:  NSGPIDEANQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCAACCCCAGCCTCAAATGCAAACCAAATTGTTCGGGAAGCATTCAATCGATGGGTCAAAGCTAATGAAAAAGCTTGTGTCTATATTCTCGCCAACATGACAGA
TGTATTTTCGAAGAAACATGAATCCTTAACCGTGGCTAAAGCGATTATGAATTCATTATGGGAAATGTTTGGGCAACCGCCATACTCCCTAAGACACAAAGCTATAAAAC
AGATTTATACAAAGCGAATGAAGGAAGGGACCTCTGTTAGGGAACATGTTCTGTTCCTGGACATGATGATGCACTTCAACATCGACGAGGTAAATAGTGGACCCATTGAT
GAGGCTAATCAGGATGACGAAAAGAAGAAAAGAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCAACCCCAGCCTCAAATGCAAACCAAATTGTTCGGGAAGCATTCAATCGATGGGTCAAAGCTAATGAAAAAGCTTGTGTCTATATTCTCGCCAACATGACAGA
TGTATTTTCGAAGAAACATGAATCCTTAACCGTGGCTAAAGCGATTATGAATTCATTATGGGAAATGTTTGGGCAACCGCCATACTCCCTAAGACACAAAGCTATAAAAC
AGATTTATACAAAGCGAATGAAGGAAGGGACCTCTGTTAGGGAACATGTTCTGTTCCTGGACATGATGATGCACTTCAACATCGACGAGGTAAATAGTGGACCCATTGAT
GAGGCTAATCAGGATGACGAAAAGAAGAAAAGAATGTGA
Protein sequenceShow/hide protein sequence
MSSTPASNANQIVREAFNRWVKANEKACVYILANMTDVFSKKHESLTVAKAIMNSLWEMFGQPPYSLRHKAIKQIYTKRMKEGTSVREHVLFLDMMMHFNIDEVNSGPID
EANQDDEKKKRM